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This page was generated on 2021-10-15 15:06:57 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for waddR on machv2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/waddR.git to
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raw results

Package 2014/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waddR 1.6.1  (landing page)
Julian Flesch
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/waddR
git_branch: RELEASE_3_13
git_last_commit: 90d967f
git_last_commit_date: 2021-05-28 18:08:13 -0400 (Fri, 28 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: waddR
Version: 1.6.1
Command: rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh waddR_1.6.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R waddR.buildbin-libdir
StartedAt: 2021-10-15 04:22:20 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 04:23:31 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 71.3 seconds
RetCode: 0
Status:   OK  
PackageFile: waddR_1.6.1.tgz
PackageFileSize: 216.3 KiB

Command output

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###
### Running command:
###
###   rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh waddR_1.6.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R waddR.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=waddR.buildbin-libdir waddR_1.6.1.tar.gz'
>>>>>>> 

* installing *source* package ‘waddR’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c wasserstein.cpp -o wasserstein.o
wasserstein.cpp:386:27: warning: unused variable 'out_it_end' [-Wunused-variable]
        vector<double>::iterator out_it_end = out.end();
                                 ^
wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable]
        T max_x = x_sorted[n-1];
          ^
wasserstein.cpp:1162:8: note: in instantiation of function template specialization 'quantile<double>' requested here
        res = quantile(x, q, type);
              ^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o waddR.so RcppExports.o wasserstein.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/waddR.buildbin-libdir/00LOCK-waddR/00new/waddR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: DEPRECATION: As of BiocFileCache (>1.15.1), default caching location has changed.
  Problematic cache: /Users/biocbuild/Library/Caches/BiocFileCache
  See https://www.bioconductor.org/packages/devel/bioc/vignettes/BiocFileCache/inst/doc/BiocFileCache.html#default-caching-location-update

** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: DEPRECATION: As of BiocFileCache (>1.15.1), default caching location has changed.
  Problematic cache: /Users/biocbuild/Library/Caches/BiocFileCache
  See https://www.bioconductor.org/packages/devel/bioc/vignettes/BiocFileCache/inst/doc/BiocFileCache.html#default-caching-location-update

** testing if installed package keeps a record of temporary installation path
* DONE (waddR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR waddR.buildbin-libdir/waddR/libs/waddR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "waddR.buildbin-libdir/waddR/libs/waddR.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "waddR.buildbin-libdir/waddR/libs/waddR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "waddR.buildbin-libdir/waddR/libs/waddR.so"