| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:23 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the sitadela package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sitadela.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1783/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sitadela 1.0.31 (landing page) Panagiotis Moulos
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: sitadela |
| Version: 1.0.31 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/sitadela_1.0.31.tar.gz && rm -rf sitadela.buildbin-libdir && mkdir sitadela.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sitadela.buildbin-libdir sitadela_1.0.31.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL sitadela_1.0.31.zip && rm sitadela_1.0.31.tar.gz sitadela_1.0.31.zip |
| StartedAt: 2021-10-14 10:22:21 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:22:27 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 6.2 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/sitadela_1.0.31.tar.gz && rm -rf sitadela.buildbin-libdir && mkdir sitadela.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sitadela.buildbin-libdir sitadela_1.0.31.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL sitadela_1.0.31.zip && rm sitadela_1.0.31.tar.gz sitadela_1.0.31.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
25 182k 25 47187 0 0 231k 0 --:--:-- --:--:-- --:--:-- 231k
100 182k 100 182k 0 0 307k 0 --:--:-- --:--:-- --:--:-- 307k
install for i386
* installing *source* package 'sitadela' ...
** using staged installation
** R
Error in parse(outFile) :
C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpY3RYEe/R.INSTALL26c03cd5793/sitadela/R/query-utils.R:992:9: unexpected symbol
991: host="genome-mysql.soe.ucsc.edu"
992: user
^
ERROR: unable to collate and parse R files for package 'sitadela'
* removing 'C:/Users/biocbuild/bbs-3.13-bioc/meat/sitadela.buildbin-libdir/sitadela'