Back to Multiple platform build/check report for BioC 3.13 

This page was generated on 20211015 15:06:22 0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the scuttle package:  Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scuttle.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.  Make sure to use the following settings in order to reproduce any error or warning you see on this page. 
Package 1721/2041  Hostname  OS / Arch  INSTALL  BUILD  CHECK  BUILD BIN  
scuttle 1.2.1 (landing page) Aaron Lun
 nebbiolo1  Linux (Ubuntu 20.04.2 LTS) / x86_64  OK  OK  WARNINGS  
tokay2  Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK  
machv2  macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK  
Package: scuttle 
Version: 1.2.1 
Command: rm rf scuttle.buildbinlibdir && mkdir scuttle.buildbinlibdir && C:\Users\biocbuild\bbs3.13bioc\R\bin\R.exe CMD INSTALL mergemultiarch build library=scuttle.buildbinlibdir scuttle_1.2.1.tar.gz 
StartedAt: 20211015 11:42:55 0400 (Fri, 15 Oct 2021) 
EndedAt: 20211015 11:45:18 0400 (Fri, 15 Oct 2021) 
EllapsedTime: 143.2 seconds 
RetCode: 0 
Status: OK 
PackageFile: scuttle_1.2.1.zip 
PackageFileSize: 2.021 MiB 
############################################################################## ############################################################################## ### ### Running command: ### ### rm rf scuttle.buildbinlibdir && mkdir scuttle.buildbinlibdir && C:\Users\biocbuild\bbs3.13bioc\R\bin\R.exe CMD INSTALL mergemultiarch build library=scuttle.buildbinlibdir scuttle_1.2.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'scuttle' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c RcppExports.cpp o RcppExports.o "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c cumulative_prop.cpp o cumulative_prop.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from cumulative_prop.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c downsample_counts.cpp o downsample_counts.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from downsample_counts.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c fit_linear_model.cpp o fit_linear_model.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from fit_linear_model.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c pool_size_factors.cpp o pool_size_factors.o pool_size_factors.cpp: In function 'Rcpp::List pool_size_factors(Rcpp::RObject, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector)': pool_size_factors.cpp:56:15: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (ngenes!=pseudo_cell.size()) { ~~~~~~^~~~~~~~~~~~~~~~~~~~ pool_size_factors.cpp:61:22: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'int'} and 'unsigned int' [Wsigncompare] if (order.size() < ncells*21) { ~~~~~~~~~~~~~^~~~~~~~~~~~ pool_size_factors.cpp:170:37: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [Wsigncompare] for (auto i=0; i<n; ++i, ++val, ++rows) { ~^~ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from pool_size_factors.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c sum_counts.cpp o sum_counts.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from sum_counts.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c utils.cpp o utils.o C:/rtools40/mingw32/bin/g++ shared s staticlibgcc o scuttle.dll tmp.def RcppExports.o cumulative_prop.o downsample_counts.o fit_linear_model.o pool_size_factors.o sum_counts.o utils.o LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/i386 lRlapack LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/i386 lRblas lgfortran lm lquadmath Lc:/extsoft/lib/i386 Lc:/extsoft/lib LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/i386 lR installing to C:/Users/biocbuild/bbs3.13bioc/meat/scuttle.buildbinlibdir/00LOCKscuttle/00new/scuttle/libs/i386 ** R ** inst ** bytecompile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scuttle' finding HTML links ... done addPerCellQCMetrics html finding level2 HTML links ... done aggregateAcrossCells html aggregateAcrossFeatures html calculateAverage html calculateCPM html calculateFPKM html calculateTPM html cleanSizeFactors html computePooledFactors html computeSpikeFactors html correctGroupSummary html downsampleBatches html downsampleMatrix html fitLinearModel html geometricSizeFactors html isOutlier html librarySizeFactors html logNormCounts html makePerCellDF html makePerFeatureDF html medianSizeFactors html mockSCE html normalizeCounts html numDetectedAcrossCells html numDetectedAcrossFeatures html perCellQCFilters html perCellQCMetrics html perFeatureQCMetrics html quickPerCellQC html readSparseCounts html reexports html scuttlepkg html scuttleutils html sumCountsAcrossCells html sumCountsAcrossFeatures html summarizeAssayByGroup html uniquifyFeatureNames html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scuttle' ... ** libs "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c RcppExports.cpp o RcppExports.o "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c cumulative_prop.cpp o cumulative_prop.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from cumulative_prop.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c downsample_counts.cpp o downsample_counts.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from downsample_counts.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c fit_linear_model.cpp o fit_linear_model.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from fit_linear_model.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c pool_size_factors.cpp o pool_size_factors.o pool_size_factors.cpp: In function 'Rcpp::List pool_size_factors(Rcpp::RObject, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector)': pool_size_factors.cpp:56:15: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (ngenes!=pseudo_cell.size()) { ~~~~~~^~~~~~~~~~~~~~~~~~~~ pool_size_factors.cpp:61:22: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'long long unsigned int' [Wsigncompare] if (order.size() < ncells*21) { ~~~~~~~~~~~~~^~~~~~~~~~~~ pool_size_factors.cpp:170:37: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [Wsigncompare] for (auto i=0; i<n; ++i, ++val, ++rows) { ~^~ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from pool_size_factors.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c sum_counts.cpp o sum_counts.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from sum_counts.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I../inst/include/ I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c utils.cpp o utils.o C:/rtools40/mingw64/bin/g++ shared s staticlibgcc o scuttle.dll tmp.def RcppExports.o cumulative_prop.o downsample_counts.o fit_linear_model.o pool_size_factors.o sum_counts.o utils.o LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/x64 lRlapack LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/x64 lRblas lgfortran lm lquadmath LC:/extsoft/lib/x64 LC:/extsoft/lib LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/x64 lR installing to C:/Users/biocbuild/bbs3.13bioc/meat/scuttle.buildbinlibdir/scuttle/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'scuttle' as scuttle_1.2.1.zip * DONE (scuttle)