Back to Multiple platform build/check report for BioC 3.13 

This page was generated on 20211015 15:06:22 0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the scran package:  Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scran.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.  Make sure to use the following settings in order to reproduce any error or warning you see on this page. 
Package 1713/2041  Hostname  OS / Arch  INSTALL  BUILD  CHECK  BUILD BIN  
scran 1.20.1 (landing page) Aaron Lun
 nebbiolo1  Linux (Ubuntu 20.04.2 LTS) / x86_64  OK  OK  WARNINGS  
tokay2  Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK  
machv2  macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK  
Package: scran 
Version: 1.20.1 
Command: C:\cygwin\bin\curl.exe O http://155.52.207.165/BBS/3.13/bioc/src/contrib/scran_1.20.1.tar.gz && rm rf scran.buildbinlibdir && mkdir scran.buildbinlibdir && C:\Users\biocbuild\bbs3.13bioc\R\bin\R.exe CMD INSTALL mergemultiarch build library=scran.buildbinlibdir scran_1.20.1.tar.gz && C:\Users\biocbuild\bbs3.13bioc\R\bin\R.exe CMD INSTALL scran_1.20.1.zip && rm scran_1.20.1.tar.gz scran_1.20.1.zip 
StartedAt: 20211014 09:17:37 0400 (Thu, 14 Oct 2021) 
EndedAt: 20211014 09:20:48 0400 (Thu, 14 Oct 2021) 
EllapsedTime: 191.1 seconds 
RetCode: 0 
Status: OK 
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe O http://155.52.207.165/BBS/3.13/bioc/src/contrib/scran_1.20.1.tar.gz && rm rf scran.buildbinlibdir && mkdir scran.buildbinlibdir && C:\Users\biocbuild\bbs3.13bioc\R\bin\R.exe CMD INSTALL mergemultiarch build library=scran.buildbinlibdir scran_1.20.1.tar.gz && C:\Users\biocbuild\bbs3.13bioc\R\bin\R.exe CMD INSTALL scran_1.20.1.zip && rm scran_1.20.1.tar.gz scran_1.20.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 :: :: :: 0 18 536k 18 101k 0 0 525k 0 0:00:01 :: 0:00:01 526k 100 536k 100 536k 0 0 1743k 0 :: :: :: 1742k install for i386 * installing *source* package 'scran' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c RcppExports.cpp o RcppExports.o "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c choose_effect_size.cpp o choose_effect_size.o choose_effect_size.cpp: In instantiation of 'size_t instantiate_list(Rcpp::List, std::vector<T>&, std::__cxx11::string) [with V = Rcpp::Vector<13>; size_t = unsigned int; Rcpp::List = Rcpp::Vector<19>; std::__cxx11::string = std::__cxx11::basic_string<char>]': choose_effect_size.cpp:38:67: required from here choose_effect_size.cpp:13:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] for (size_t c=0; c<input.size(); ++c) { ~^~~~~~~~~~~~~ choose_effect_size.cpp: In instantiation of 'size_t instantiate_list(Rcpp::List, std::vector<T>&, std::__cxx11::string) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; size_t = unsigned int; Rcpp::List = Rcpp::Vector<19>; std::__cxx11::string = std::__cxx11::basic_string<char>]': choose_effect_size.cpp:67:70: required from here choose_effect_size.cpp:13:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c combine_rho.cpp o combine_rho.o "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c compute_blocked_stats.cpp o compute_blocked_stats.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from compute_blocked_stats.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c compute_residual_stats.cpp o compute_residual_stats.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from compute_residual_stats.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c compute_rho_null.cpp o compute_rho_null.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:22, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/random.hpp:69, from rand_custom.h:6, from compute_rho_null.cpp:3: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c cyclone_scores.cpp o cyclone_scores.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/iterator/iterator_concepts.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/range/concepts.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/range/algorithm.hpp:29, from cyclone_scores.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from cyclone_scores.cpp:3: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c overlap_exprs.cpp o overlap_exprs.o overlap_exprs.cpp: In function 'Rcpp::NumericMatrix overlap_exprs_paired(Rcpp::RObject, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::List, double)': overlap_exprs.cpp:214:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] for (size_t i=0; i<left.size(); ++i, ++oIt) { ~^~~~~~~~~~~~ overlap_exprs.cpp:202:18: warning: unused variable 'ngroups' [Wunusedvariable] const size_t ngroups=groups.size(); ^~~~~~~ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from overlap_exprs.cpp:3: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'R_xlen_t' {aka 'int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = unsigned int; size_t = unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const unsigned int' [Wsigncompare] "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c rand_custom.cpp o rand_custom.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:22, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/random.hpp:69, from rand_custom.h:6, from rand_custom.cpp:1: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ C:/rtools40/mingw32/bin/g++ shared s staticlibgcc o scran.dll tmp.def RcppExports.o choose_effect_size.o combine_rho.o compute_blocked_stats.o compute_residual_stats.o compute_rho_null.o cyclone_scores.o overlap_exprs.o rand_custom.o LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/i386 lRlapack LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/i386 lRblas lgfortran lm lquadmath Lc:/extsoft/lib/i386 Lc:/extsoft/lib LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/i386 lR installing to C:/Users/biocbuild/bbs3.13bioc/meat/scran.buildbinlibdir/00LOCKscran/00new/scran/libs/i386 ** R ** inst ** bytecompile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scran' finding HTML links ... done DM html buildSNNGraph html finding level2 HTML links ... done clusterCells html combineBlocks html combineMarkers html combinePValues html combineVar html computeMinRank html computeSumFactors html convertTo html correlateGenes html correlateNull html correlatePairs html cyclone html decideTestsPerLabel html defunct html denoisePCA html findMarkers html fitTrendCV2 html fitTrendPoisson html fitTrendVar html fixedPCA html gene_selection html getClusteredPCs html getMarkerEffects html getTopHVGs html getTopMarkers html logBH html modelGeneCV2 html modelGeneCV2WithSpikes html modelGeneVar html modelGeneVarByPoisson html modelGeneVarWithSpikes html multiMarkerStats html pairwiseBinom html pairwiseTTests html pairwiseWilcox html pseudoBulkDGE html pseudoBulkSpecific html quickCluster html quickSubCluster html rhoToPValue html sandbag html scaledColRanks html scoreMarkers html summaryMarkerStats html testLinearModel html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scran' ... ** libs "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c RcppExports.cpp o RcppExports.o "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c choose_effect_size.cpp o choose_effect_size.o choose_effect_size.cpp: In instantiation of 'size_t instantiate_list(Rcpp::List, std::vector<T>&, std::__cxx11::string) [with V = Rcpp::Vector<13>; size_t = long long unsigned int; Rcpp::List = Rcpp::Vector<19>; std::__cxx11::string = std::__cxx11::basic_string<char>]': choose_effect_size.cpp:38:67: required from here choose_effect_size.cpp:13:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] for (size_t c=0; c<input.size(); ++c) { ~^~~~~~~~~~~~~ choose_effect_size.cpp: In instantiation of 'size_t instantiate_list(Rcpp::List, std::vector<T>&, std::__cxx11::string) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; size_t = long long unsigned int; Rcpp::List = Rcpp::Vector<19>; std::__cxx11::string = std::__cxx11::basic_string<char>]': choose_effect_size.cpp:67:70: required from here choose_effect_size.cpp:13:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c combine_rho.cpp o combine_rho.o "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c compute_blocked_stats.cpp o compute_blocked_stats.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from compute_blocked_stats.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c compute_residual_stats.cpp o compute_residual_stats.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from compute_residual_stats.cpp:2: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c compute_rho_null.cpp o compute_rho_null.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:22, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/random.hpp:69, from rand_custom.h:6, from compute_rho_null.cpp:3: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c cyclone_scores.cpp o cyclone_scores.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/iterator/iterator_concepts.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/range/concepts.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/range/algorithm.hpp:29, from cyclone_scores.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from cyclone_scores.cpp:3: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c overlap_exprs.cpp o overlap_exprs.o overlap_exprs.cpp: In function 'Rcpp::NumericMatrix overlap_exprs_paired(Rcpp::RObject, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::List, double)': overlap_exprs.cpp:214:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] for (size_t i=0; i<left.size(); ++i, ++oIt) { ~^~~~~~~~~~~~ overlap_exprs.cpp:202:18: warning: unused variable 'ngroups' [Wunusedvariable] const size_t ngroups=groups.size(); ^~~~~~~ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:12, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/beachmat.h:24, from overlap_exprs.cpp:3: C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<13>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:36:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:38:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::SparseArraySeed_reader<V, TIT>::SparseArraySeed_reader(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:561:56: required from 'beachmat::lin_SparseArraySeed<V, TIT>::lin_SparseArraySeed(Rcpp::RObject) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:40:39: required from 'std::unique_ptr<_Codecvt> beachmat::read_lin_sparse_block_raw(Rcpp::RObject) [with M = beachmat::lin_matrix; Rcpp::RObject = Rcpp::RObject_Impl<Rcpp::PreserveStorage>]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/read_lin_block.h:65:63: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:535:17: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [Wsigncompare] if (nnz != x.size()) { C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:45: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:551:73: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] if (lastR <= 0  lastR > NR  lastC <= 0  lastC > NC) { ~~~~~~^~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:593:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [Wsigncompare] for (int v = 0; v < nnz; ++v, ++rowIt, ++colIt, ++xIt) { ~~^~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] if (idex != *pIt && static_cast<size_t>(i[idex]) == r) { ~~~~~^~~~~~~ C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const double*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; TIT = const double*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const int*; ALT = int*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const int*; ALT = int*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:596:82: required from 'beachmat::sparse_index<const int*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, int*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:595:35: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h: In instantiation of 'beachmat::sparse_index<OUT, I> beachmat::Csparse_core<TIT, I, P>::get_row(size_t, ALT, I*, size_t, size_t) [with OUT = const double*; ALT = double*; TIT = const int*; I = int; P = long long unsigned int; size_t = long long unsigned int]': C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:650:73: required from 'beachmat::sparse_index<OUT, int> beachmat::SparseArraySeed_reader<V, TIT>::get_row(size_t, ALT, int*, size_t, size_t) [with OUT = const double*; ALT = double*; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:602:85: required from 'beachmat::sparse_index<const double*, int> beachmat::lin_SparseArraySeed<V, TIT>::get_row(size_t, double*, int*, size_t, size_t) [with V = Rcpp::Vector<10, Rcpp::PreserveStorage>; TIT = const int*; size_t = long long unsigned int]' C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/lin_matrix.h:601:38: required from here C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include/beachmat3/Csparse_reader.h:250:22: warning: comparison of integer expressions of different signedness: 'const int' and 'const long long unsigned int' [Wsigncompare] "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/beachmat/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/dqrng/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/scuttle/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c rand_custom.cpp o rand_custom.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/random/hyperexponential_distribution.hpp:22, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/random.hpp:69, from rand_custom.h:6, from rand_custom.cpp:1: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ C:/rtools40/mingw64/bin/g++ shared s staticlibgcc o scran.dll tmp.def RcppExports.o choose_effect_size.o combine_rho.o compute_blocked_stats.o compute_residual_stats.o compute_rho_null.o cyclone_scores.o overlap_exprs.o rand_custom.o LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/x64 lRlapack LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/x64 lRblas lgfortran lm lquadmath LC:/extsoft/lib/x64 LC:/extsoft/lib LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/x64 lR installing to C:/Users/biocbuild/bbs3.13bioc/meat/scran.buildbinlibdir/scran/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'scran' as scran_1.20.1.zip * DONE (scran) * installing to library 'C:/Users/biocbuild/bbs3.13bioc/R/library' package 'scran' successfully unpacked and MD5 sums checked