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This page was generated on 2021-10-15 15:06:19 -0400 (Fri, 15 Oct 2021).

BUILD results for rfPred on tokay2

To the developers/maintainers of the rfPred package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rfPred.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1563/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rfPred 1.30.0  (landing page)
Hugo Varet
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/rfPred
git_branch: RELEASE_3_13
git_last_commit: 1289b9d
git_last_commit_date: 2021-05-19 11:59:56 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rfPred
Version: 1.30.0
Command: chmod a+r rfPred -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rfPred
StartedAt: 2021-10-14 17:33:44 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 17:34:20 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 35.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r rfPred -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rfPred
###
##############################################################################
##############################################################################


* checking for file 'rfPred/DESCRIPTION' ... OK
* preparing 'rfPred':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'vignette.Rnw' using Sweave
Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

Loading required package: data.table

Attaching package: 'data.table'

The following object is masked from 'package:GenomicRanges':

    shift

The following object is masked from 'package:IRanges':

    shift

The following objects are masked from 'package:S4Vectors':

    first, second


[E::hts_open_format] Failed to open file http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
 chunk 4 
Error : scanTabix: failed to open file: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
 path: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
 index: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz.tbi

--- failed re-building 'vignette.Rnw'

SUMMARY: processing the following file failed:
  'vignette.Rnw'

Error: Vignette re-building failed.
Execution halted