Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-10-15 15:06:17 -0400 (Fri, 15 Oct 2021).

CHECK results for pwrEWAS on tokay2

To the developers/maintainers of the pwrEWAS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pwrEWAS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1467/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pwrEWAS 1.6.0  (landing page)
Stefan Graw
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/pwrEWAS
git_branch: RELEASE_3_13
git_last_commit: 48c3ab7
git_last_commit_date: 2021-05-19 12:46:19 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: pwrEWAS
Version: 1.6.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pwrEWAS.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings pwrEWAS_1.6.0.tar.gz
StartedAt: 2021-10-15 03:54:49 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 04:03:23 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 513.2 seconds
RetCode: 0
Status:   OK  
CheckDir: pwrEWAS.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pwrEWAS.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings pwrEWAS_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/pwrEWAS.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pwrEWAS/DESCRIPTION' ... OK
* this is package 'pwrEWAS' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pwrEWAS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
pwrEWAS              15.09   2.03   48.66
pwrEWAS_powerPlot    12.92   0.66   44.27
pwrEWAS_deltaDensity 12.06   0.65   41.61
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
pwrEWAS              15.09   1.77   48.05
pwrEWAS_deltaDensity 12.81   0.69   44.51
pwrEWAS_powerPlot    12.83   0.64   44.06
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

pwrEWAS.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/pwrEWAS_1.6.0.tar.gz && rm -rf pwrEWAS.buildbin-libdir && mkdir pwrEWAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pwrEWAS.buildbin-libdir pwrEWAS_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL pwrEWAS_1.6.0.zip && rm pwrEWAS_1.6.0.tar.gz pwrEWAS_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 52624  100 52624    0     0   335k      0 --:--:-- --:--:-- --:--:--  338k

install for i386

* installing *source* package 'pwrEWAS' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'pwrEWAS'
    finding HTML links ... done
    pwrEWAS                                 html  
    pwrEWAS_deltaDensity                    html  
    pwrEWAS_powerPlot                       html  
    pwrEWAS_shiny                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pwrEWAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pwrEWAS' as pwrEWAS_1.6.0.zip
* DONE (pwrEWAS)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'pwrEWAS' successfully unpacked and MD5 sums checked

Tests output

pwrEWAS.Rcheck/tests_i386/runTests.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("pwrEWAS")
snapshotDate(): 2021-05-18
see ?pwrEWAS.data and browseVignettes('pwrEWAS.data') for documentation
loading from cache
[2021-10-15 04:02:13] Finding tau...done [2021-10-15 04:02:19]
[1] "The following taus were chosen: 0.22265625"
[2021-10-15 04:02:19] Running simulation

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
[2021-10-15 04:02:19] Running simulation ... done [2021-10-15 04:02:35]


RUNIT TEST PROTOCOL -- Fri Oct 15 04:02:35 2021 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
pwrEWAS RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  19.93    1.90   38.93 

pwrEWAS.Rcheck/tests_x64/runTests.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("pwrEWAS")
snapshotDate(): 2021-05-18
see ?pwrEWAS.data and browseVignettes('pwrEWAS.data') for documentation
loading from cache
[2021-10-15 04:02:52] Finding tau...done [2021-10-15 04:02:58]
[1] "The following taus were chosen: 0.224609375"
[2021-10-15 04:02:58] Running simulation

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
[2021-10-15 04:02:58] Running simulation ... done [2021-10-15 04:03:12]


RUNIT TEST PROTOCOL -- Fri Oct 15 04:03:12 2021 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
pwrEWAS RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  20.10    1.42   35.98 

Example timings

pwrEWAS.Rcheck/examples_i386/pwrEWAS-Ex.timings

nameusersystemelapsed
pwrEWAS15.09 2.0348.66
pwrEWAS_deltaDensity12.06 0.6541.61
pwrEWAS_powerPlot12.92 0.6644.27
pwrEWAS_shiny000

pwrEWAS.Rcheck/examples_x64/pwrEWAS-Ex.timings

nameusersystemelapsed
pwrEWAS15.09 1.7748.05
pwrEWAS_deltaDensity12.81 0.6944.51
pwrEWAS_powerPlot12.83 0.6444.06
pwrEWAS_shiny000