Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:17 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the projectR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/projectR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1442/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
projectR 1.8.0 (landing page) Genevieve Stein-O'Brien
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: projectR |
Version: 1.8.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:projectR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings projectR_1.8.0.tar.gz |
StartedAt: 2021-10-15 03:45:33 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 03:52:35 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 421.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: projectR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:projectR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings projectR_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/projectR.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'projectR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'projectR' version '1.8.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'projectR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE alluvialMat: no visible binding for global variable 'celltype' alluvialMat: no visible binding for global variable 'variable' alluvialMat: no visible binding for global variable 'value' alluvialMat: no visible binding for global variable 'nCells' alluvialMat: no visible binding for global variable 'nCells_per_type' alluvialMat: no visible binding for global variable 'nCells_per_pattern' alluvialMat: no visible binding for global variable 'prop' Undefined global functions or variables: celltype nCells nCells_per_pattern nCells_per_type prop value variable * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed projectR-methods 51.9 0.02 51.92 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed projectR-methods 36.1 0.04 36.17 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/projectR.Rcheck/00check.log' for details.
projectR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/projectR_1.8.0.tar.gz && rm -rf projectR.buildbin-libdir && mkdir projectR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=projectR.buildbin-libdir projectR_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL projectR_1.8.0.zip && rm projectR_1.8.0.tar.gz projectR_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 50 869k 50 441k 0 0 1174k 0 --:--:-- --:--:-- --:--:-- 1174k 100 869k 100 869k 0 0 1906k 0 --:--:-- --:--:-- --:--:-- 1906k install for i386 * installing *source* package 'projectR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'projectR' finding HTML links ... done AP.RNAseq6l3c3t html alluvialMat html aucMat html cluster2pattern-methods html clusterPlotR-methods html correlateR-class html correlateR html geneMatchR html initialize-correlateR-method html initialize-rotatoR-method html intersectoR-methods html map.ESepiGen4c1l html map.RNAseq6l3c3t html p.ESepiGen4c1l html p.RNAseq6l3c3t html pd.ESepiGen4c1l html pd.RNAseq6l3c3t html projectR-methods html rotatoR-class html rotatoR html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'projectR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'projectR' as projectR_1.8.0.zip * DONE (projectR) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'projectR' successfully unpacked and MD5 sums checked
projectR.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(projectR) > > test_check("projectR") This is CoGAPS version 3.12.0 Running Standard CoGAPS on p.RNAseq6l3c3t (108 genes and 54 samples) with parameters: -- Standard Parameters -- nPatterns 5 nIterations 50000 seed 489 sparseOptimization FALSE -- Sparsity Parameters -- alpha 0.01 maxGibbsMass 100 Data Model: Dense, Normal Sampler Type: Sequential Loading Data...Done! (00:00:00) -- Equilibration Phase -- 1000 of 50000, Atoms: 203(A), 156(P), ChiSq: 48736, Time: 00:00:00 / 00:00:00 2000 of 50000, Atoms: 251(A), 158(P), ChiSq: 37650, Time: 00:00:00 / 00:00:00 3000 of 50000, Atoms: 266(A), 175(P), ChiSq: 35659, Time: 00:00:00 / 00:00:00 4000 of 50000, Atoms: 274(A), 172(P), ChiSq: 33926, Time: 00:00:01 / 00:00:36 5000 of 50000, Atoms: 311(A), 171(P), ChiSq: 32604, Time: 00:00:01 / 00:00:27 6000 of 50000, Atoms: 349(A), 188(P), ChiSq: 31108, Time: 00:00:02 / 00:00:45 7000 of 50000, Atoms: 350(A), 196(P), ChiSq: 30719, Time: 00:00:02 / 00:00:38 8000 of 50000, Atoms: 370(A), 204(P), ChiSq: 30419, Time: 00:00:02 / 00:00:32 9000 of 50000, Atoms: 392(A), 206(P), ChiSq: 29871, Time: 00:00:03 / 00:00:43 10000 of 50000, Atoms: 399(A), 200(P), ChiSq: 29604, Time: 00:00:03 / 00:00:38 11000 of 50000, Atoms: 408(A), 200(P), ChiSq: 29151, Time: 00:00:04 / 00:00:46 12000 of 50000, Atoms: 427(A), 222(P), ChiSq: 29125, Time: 00:00:04 / 00:00:41 13000 of 50000, Atoms: 405(A), 208(P), ChiSq: 28997, Time: 00:00:05 / 00:00:47 14000 of 50000, Atoms: 421(A), 200(P), ChiSq: 28828, Time: 00:00:05 / 00:00:43 15000 of 50000, Atoms: 420(A), 208(P), ChiSq: 28769, Time: 00:00:05 / 00:00:40 16000 of 50000, Atoms: 441(A), 220(P), ChiSq: 28709, Time: 00:00:06 / 00:00:45 17000 of 50000, Atoms: 439(A), 224(P), ChiSq: 28703, Time: 00:00:06 / 00:00:42 18000 of 50000, Atoms: 439(A), 221(P), ChiSq: 28525, Time: 00:00:07 / 00:00:46 19000 of 50000, Atoms: 442(A), 228(P), ChiSq: 28487, Time: 00:00:07 / 00:00:43 20000 of 50000, Atoms: 459(A), 236(P), ChiSq: 28428, Time: 00:00:08 / 00:00:47 21000 of 50000, Atoms: 458(A), 239(P), ChiSq: 28385, Time: 00:00:08 / 00:00:44 22000 of 50000, Atoms: 461(A), 222(P), ChiSq: 28269, Time: 00:00:09 / 00:00:47 23000 of 50000, Atoms: 470(A), 213(P), ChiSq: 28323, Time: 00:00:09 / 00:00:45 24000 of 50000, Atoms: 467(A), 233(P), ChiSq: 28240, Time: 00:00:10 / 00:00:48 25000 of 50000, Atoms: 471(A), 226(P), ChiSq: 28245, Time: 00:00:10 / 00:00:46 26000 of 50000, Atoms: 464(A), 241(P), ChiSq: 28260, Time: 00:00:10 / 00:00:44 27000 of 50000, Atoms: 460(A), 237(P), ChiSq: 28268, Time: 00:00:11 / 00:00:46 28000 of 50000, Atoms: 460(A), 226(P), ChiSq: 28246, Time: 00:00:11 / 00:00:44 29000 of 50000, Atoms: 467(A), 230(P), ChiSq: 28207, Time: 00:00:12 / 00:00:46 30000 of 50000, Atoms: 471(A), 255(P), ChiSq: 28194, Time: 00:00:12 / 00:00:45 31000 of 50000, Atoms: 460(A), 245(P), ChiSq: 28237, Time: 00:00:13 / 00:00:47 32000 of 50000, Atoms: 449(A), 244(P), ChiSq: 28181, Time: 00:00:13 / 00:00:45 33000 of 50000, Atoms: 461(A), 233(P), ChiSq: 28216, Time: 00:00:14 / 00:00:47 34000 of 50000, Atoms: 488(A), 229(P), ChiSq: 28199, Time: 00:00:14 / 00:00:45 35000 of 50000, Atoms: 457(A), 242(P), ChiSq: 28166, Time: 00:00:15 / 00:00:47 36000 of 50000, Atoms: 465(A), 224(P), ChiSq: 28204, Time: 00:00:15 / 00:00:46 37000 of 50000, Atoms: 469(A), 230(P), ChiSq: 28235, Time: 00:00:16 / 00:00:47 38000 of 50000, Atoms: 461(A), 230(P), ChiSq: 28244, Time: 00:00:16 / 00:00:46 39000 of 50000, Atoms: 473(A), 231(P), ChiSq: 28278, Time: 00:00:17 / 00:00:47 40000 of 50000, Atoms: 478(A), 232(P), ChiSq: 28228, Time: 00:00:17 / 00:00:46 41000 of 50000, Atoms: 454(A), 230(P), ChiSq: 28196, Time: 00:00:18 / 00:00:47 42000 of 50000, Atoms: 437(A), 235(P), ChiSq: 28208, Time: 00:00:18 / 00:00:46 43000 of 50000, Atoms: 464(A), 235(P), ChiSq: 28251, Time: 00:00:19 / 00:00:48 44000 of 50000, Atoms: 445(A), 226(P), ChiSq: 28248, Time: 00:00:19 / 00:00:46 45000 of 50000, Atoms: 460(A), 231(P), ChiSq: 28270, Time: 00:00:20 / 00:00:48 46000 of 50000, Atoms: 462(A), 245(P), ChiSq: 28290, Time: 00:00:20 / 00:00:46 47000 of 50000, Atoms: 458(A), 230(P), ChiSq: 28270, Time: 00:00:21 / 00:00:48 48000 of 50000, Atoms: 468(A), 237(P), ChiSq: 28249, Time: 00:00:21 / 00:00:47 49000 of 50000, Atoms: 461(A), 221(P), ChiSq: 28278, Time: 00:00:22 / 00:00:48 50000 of 50000, Atoms: 453(A), 235(P), ChiSq: 28233, Time: 00:00:22 / 00:00:47 -- Sampling Phase -- 1000 of 50000, Atoms: 463(A), 236(P), ChiSq: 28214, Time: 00:00:23 / 00:00:48 2000 of 50000, Atoms: 456(A), 242(P), ChiSq: 28215, Time: 00:00:24 / 00:00:49 3000 of 50000, Atoms: 468(A), 234(P), ChiSq: 28276, Time: 00:00:24 / 00:00:48 4000 of 50000, Atoms: 480(A), 236(P), ChiSq: 28195, Time: 00:00:25 / 00:00:49 5000 of 50000, Atoms: 454(A), 228(P), ChiSq: 28205, Time: 00:00:25 / 00:00:48 6000 of 50000, Atoms: 472(A), 228(P), ChiSq: 28183, Time: 00:00:26 / 00:00:49 7000 of 50000, Atoms: 487(A), 224(P), ChiSq: 28183, Time: 00:00:26 / 00:00:48 8000 of 50000, Atoms: 476(A), 236(P), ChiSq: 28291, Time: 00:00:27 / 00:00:49 9000 of 50000, Atoms: 484(A), 232(P), ChiSq: 28208, Time: 00:00:27 / 00:00:48 10000 of 50000, Atoms: 461(A), 226(P), ChiSq: 28230, Time: 00:00:28 / 00:00:49 11000 of 50000, Atoms: 465(A), 237(P), ChiSq: 28249, Time: 00:00:28 / 00:00:48 12000 of 50000, Atoms: 464(A), 233(P), ChiSq: 28255, Time: 00:00:29 / 00:00:49 13000 of 50000, Atoms: 472(A), 233(P), ChiSq: 28186, Time: 00:00:29 / 00:00:48 14000 of 50000, Atoms: 469(A), 226(P), ChiSq: 28225, Time: 00:00:30 / 00:00:48 15000 of 50000, Atoms: 478(A), 234(P), ChiSq: 28230, Time: 00:00:30 / 00:00:48 16000 of 50000, Atoms: 480(A), 225(P), ChiSq: 28200, Time: 00:00:31 / 00:00:48 17000 of 50000, Atoms: 472(A), 222(P), ChiSq: 28230, Time: 00:00:31 / 00:00:48 18000 of 50000, Atoms: 447(A), 222(P), ChiSq: 28327, Time: 00:00:32 / 00:00:48 19000 of 50000, Atoms: 474(A), 224(P), ChiSq: 28270, Time: 00:00:32 / 00:00:48 20000 of 50000, Atoms: 455(A), 229(P), ChiSq: 28211, Time: 00:00:33 / 00:00:48 21000 of 50000, Atoms: 480(A), 229(P), ChiSq: 28233, Time: 00:00:33 / 00:00:48 22000 of 50000, Atoms: 475(A), 227(P), ChiSq: 28259, Time: 00:00:34 / 00:00:48 23000 of 50000, Atoms: 482(A), 223(P), ChiSq: 28198, Time: 00:00:34 / 00:00:48 24000 of 50000, Atoms: 474(A), 233(P), ChiSq: 28219, Time: 00:00:35 / 00:00:48 25000 of 50000, Atoms: 468(A), 240(P), ChiSq: 28210, Time: 00:00:35 / 00:00:47 26000 of 50000, Atoms: 477(A), 243(P), ChiSq: 28233, Time: 00:00:36 / 00:00:48 27000 of 50000, Atoms: 462(A), 231(P), ChiSq: 28312, Time: 00:00:36 / 00:00:47 28000 of 50000, Atoms: 462(A), 231(P), ChiSq: 28193, Time: 00:00:37 / 00:00:48 29000 of 50000, Atoms: 470(A), 239(P), ChiSq: 28268, Time: 00:00:37 / 00:00:47 30000 of 50000, Atoms: 462(A), 234(P), ChiSq: 28221, Time: 00:00:38 / 00:00:48 31000 of 50000, Atoms: 474(A), 231(P), ChiSq: 28274, Time: 00:00:38 / 00:00:47 32000 of 50000, Atoms: 462(A), 232(P), ChiSq: 28251, Time: 00:00:39 / 00:00:48 33000 of 50000, Atoms: 479(A), 235(P), ChiSq: 28213, Time: 00:00:39 / 00:00:47 34000 of 50000, Atoms: 460(A), 232(P), ChiSq: 28231, Time: 00:00:40 / 00:00:48 35000 of 50000, Atoms: 470(A), 213(P), ChiSq: 28206, Time: 00:00:40 / 00:00:47 36000 of 50000, Atoms: 475(A), 221(P), ChiSq: 28164, Time: 00:00:41 / 00:00:48 37000 of 50000, Atoms: 475(A), 230(P), ChiSq: 28190, Time: 00:00:41 / 00:00:47 38000 of 50000, Atoms: 463(A), 233(P), ChiSq: 28294, Time: 00:00:42 / 00:00:48 39000 of 50000, Atoms: 469(A), 226(P), ChiSq: 28236, Time: 00:00:42 / 00:00:47 40000 of 50000, Atoms: 480(A), 234(P), ChiSq: 28264, Time: 00:00:43 / 00:00:48 41000 of 50000, Atoms: 479(A), 235(P), ChiSq: 28197, Time: 00:00:43 / 00:00:47 42000 of 50000, Atoms: 458(A), 232(P), ChiSq: 28234, Time: 00:00:44 / 00:00:48 43000 of 50000, Atoms: 484(A), 232(P), ChiSq: 28228, Time: 00:00:44 / 00:00:47 44000 of 50000, Atoms: 462(A), 242(P), ChiSq: 28222, Time: 00:00:45 / 00:00:48 45000 of 50000, Atoms: 481(A), 230(P), ChiSq: 28271, Time: 00:00:45 / 00:00:47 46000 of 50000, Atoms: 464(A), 226(P), ChiSq: 28130, Time: 00:00:46 / 00:00:48 47000 of 50000, Atoms: 471(A), 222(P), ChiSq: 28282, Time: 00:00:46 / 00:00:47 48000 of 50000, Atoms: 459(A), 223(P), ChiSq: 28241, Time: 00:00:47 / 00:00:48 49000 of 50000, Atoms: 473(A), 237(P), ChiSq: 28235, Time: 00:00:47 / 00:00:47 50000 of 50000, Atoms: 457(A), 242(P), ChiSq: 28244, Time: 00:00:48 / 00:00:48 [1] "93 row names matched between data and loadings" [1] "Updated dimension of data: 93 9" [1] "93 row names matched between data and loadings" [1] "Updated dimension of data: 93 9" [1] "93 row names matched between data and loadings" [1] "Updated dimension of data: 93 9" [ FAIL 0 | WARN 13 | SKIP 0 | PASS 24 ] > > proc.time() user system elapsed 56.53 0.65 57.17 |
projectR.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(projectR) > > test_check("projectR") This is CoGAPS version 3.12.0 Running Standard CoGAPS on p.RNAseq6l3c3t (108 genes and 54 samples) with parameters: -- Standard Parameters -- nPatterns 5 nIterations 50000 seed 5 sparseOptimization FALSE -- Sparsity Parameters -- alpha 0.01 maxGibbsMass 100 Data Model: Dense, Normal Sampler Type: Sequential Loading Data...Done! (00:00:00) -- Equilibration Phase -- 1000 of 50000, Atoms: 171(A), 149(P), ChiSq: 52775, Time: 00:00:00 / 00:00:00 2000 of 50000, Atoms: 217(A), 166(P), ChiSq: 39788, Time: 00:00:00 / 00:00:00 3000 of 50000, Atoms: 255(A), 208(P), ChiSq: 35573, Time: 00:00:00 / 00:00:00 4000 of 50000, Atoms: 284(A), 197(P), ChiSq: 33761, Time: 00:00:01 / 00:00:36 5000 of 50000, Atoms: 303(A), 208(P), ChiSq: 32559, Time: 00:00:01 / 00:00:27 6000 of 50000, Atoms: 299(A), 209(P), ChiSq: 32130, Time: 00:00:01 / 00:00:22 7000 of 50000, Atoms: 320(A), 214(P), ChiSq: 31675, Time: 00:00:02 / 00:00:38 8000 of 50000, Atoms: 325(A), 219(P), ChiSq: 31336, Time: 00:00:02 / 00:00:32 9000 of 50000, Atoms: 329(A), 235(P), ChiSq: 31429, Time: 00:00:02 / 00:00:28 10000 of 50000, Atoms: 329(A), 235(P), ChiSq: 30816, Time: 00:00:03 / 00:00:38 11000 of 50000, Atoms: 341(A), 229(P), ChiSq: 30863, Time: 00:00:03 / 00:00:34 12000 of 50000, Atoms: 351(A), 228(P), ChiSq: 30874, Time: 00:00:03 / 00:00:31 13000 of 50000, Atoms: 337(A), 234(P), ChiSq: 30740, Time: 00:00:04 / 00:00:38 14000 of 50000, Atoms: 344(A), 228(P), ChiSq: 30578, Time: 00:00:04 / 00:00:35 15000 of 50000, Atoms: 357(A), 251(P), ChiSq: 30533, Time: 00:00:04 / 00:00:32 16000 of 50000, Atoms: 367(A), 264(P), ChiSq: 30450, Time: 00:00:05 / 00:00:37 17000 of 50000, Atoms: 386(A), 249(P), ChiSq: 30364, Time: 00:00:05 / 00:00:35 18000 of 50000, Atoms: 395(A), 241(P), ChiSq: 30293, Time: 00:00:05 / 00:00:33 19000 of 50000, Atoms: 392(A), 241(P), ChiSq: 30146, Time: 00:00:06 / 00:00:37 20000 of 50000, Atoms: 405(A), 271(P), ChiSq: 30160, Time: 00:00:06 / 00:00:35 21000 of 50000, Atoms: 392(A), 238(P), ChiSq: 30162, Time: 00:00:06 / 00:00:33 22000 of 50000, Atoms: 389(A), 250(P), ChiSq: 30088, Time: 00:00:07 / 00:00:37 23000 of 50000, Atoms: 396(A), 253(P), ChiSq: 30054, Time: 00:00:07 / 00:00:35 24000 of 50000, Atoms: 411(A), 238(P), ChiSq: 29995, Time: 00:00:07 / 00:00:33 25000 of 50000, Atoms: 409(A), 264(P), ChiSq: 29985, Time: 00:00:08 / 00:00:36 26000 of 50000, Atoms: 401(A), 253(P), ChiSq: 29990, Time: 00:00:08 / 00:00:35 27000 of 50000, Atoms: 414(A), 255(P), ChiSq: 29928, Time: 00:00:08 / 00:00:33 28000 of 50000, Atoms: 389(A), 261(P), ChiSq: 30076, Time: 00:00:09 / 00:00:36 29000 of 50000, Atoms: 407(A), 253(P), ChiSq: 29908, Time: 00:00:09 / 00:00:35 30000 of 50000, Atoms: 418(A), 250(P), ChiSq: 29986, Time: 00:00:10 / 00:00:37 31000 of 50000, Atoms: 388(A), 251(P), ChiSq: 30000, Time: 00:00:10 / 00:00:36 32000 of 50000, Atoms: 396(A), 253(P), ChiSq: 30024, Time: 00:00:10 / 00:00:35 33000 of 50000, Atoms: 398(A), 259(P), ChiSq: 29989, Time: 00:00:11 / 00:00:37 34000 of 50000, Atoms: 413(A), 249(P), ChiSq: 30056, Time: 00:00:11 / 00:00:36 35000 of 50000, Atoms: 398(A), 255(P), ChiSq: 29950, Time: 00:00:12 / 00:00:38 36000 of 50000, Atoms: 398(A), 262(P), ChiSq: 30030, Time: 00:00:12 / 00:00:36 37000 of 50000, Atoms: 391(A), 266(P), ChiSq: 29957, Time: 00:00:12 / 00:00:35 38000 of 50000, Atoms: 411(A), 263(P), ChiSq: 30018, Time: 00:00:13 / 00:00:37 39000 of 50000, Atoms: 415(A), 248(P), ChiSq: 29986, Time: 00:00:13 / 00:00:36 40000 of 50000, Atoms: 402(A), 252(P), ChiSq: 29997, Time: 00:00:13 / 00:00:35 41000 of 50000, Atoms: 404(A), 251(P), ChiSq: 29947, Time: 00:00:14 / 00:00:37 42000 of 50000, Atoms: 409(A), 241(P), ChiSq: 29928, Time: 00:00:14 / 00:00:36 43000 of 50000, Atoms: 404(A), 263(P), ChiSq: 29979, Time: 00:00:14 / 00:00:35 44000 of 50000, Atoms: 410(A), 257(P), ChiSq: 29991, Time: 00:00:15 / 00:00:36 45000 of 50000, Atoms: 402(A), 255(P), ChiSq: 29944, Time: 00:00:15 / 00:00:36 46000 of 50000, Atoms: 407(A), 258(P), ChiSq: 29988, Time: 00:00:15 / 00:00:35 47000 of 50000, Atoms: 409(A), 243(P), ChiSq: 30039, Time: 00:00:16 / 00:00:36 48000 of 50000, Atoms: 407(A), 250(P), ChiSq: 29953, Time: 00:00:16 / 00:00:35 49000 of 50000, Atoms: 413(A), 272(P), ChiSq: 29952, Time: 00:00:16 / 00:00:35 50000 of 50000, Atoms: 398(A), 249(P), ChiSq: 30047, Time: 00:00:17 / 00:00:36 -- Sampling Phase -- 1000 of 50000, Atoms: 417(A), 241(P), ChiSq: 29959, Time: 00:00:17 / 00:00:35 2000 of 50000, Atoms: 412(A), 256(P), ChiSq: 29914, Time: 00:00:17 / 00:00:34 3000 of 50000, Atoms: 399(A), 268(P), ChiSq: 29959, Time: 00:00:18 / 00:00:36 4000 of 50000, Atoms: 407(A), 272(P), ChiSq: 30012, Time: 00:00:18 / 00:00:35 5000 of 50000, Atoms: 405(A), 245(P), ChiSq: 29972, Time: 00:00:19 / 00:00:36 6000 of 50000, Atoms: 413(A), 263(P), ChiSq: 29976, Time: 00:00:19 / 00:00:35 7000 of 50000, Atoms: 405(A), 257(P), ChiSq: 29903, Time: 00:00:19 / 00:00:35 8000 of 50000, Atoms: 403(A), 255(P), ChiSq: 29848, Time: 00:00:20 / 00:00:36 9000 of 50000, Atoms: 411(A), 253(P), ChiSq: 29877, Time: 00:00:20 / 00:00:35 10000 of 50000, Atoms: 392(A), 255(P), ChiSq: 29970, Time: 00:00:20 / 00:00:35 11000 of 50000, Atoms: 405(A), 246(P), ChiSq: 29954, Time: 00:00:21 / 00:00:36 12000 of 50000, Atoms: 410(A), 247(P), ChiSq: 30024, Time: 00:00:21 / 00:00:35 13000 of 50000, Atoms: 401(A), 263(P), ChiSq: 30006, Time: 00:00:21 / 00:00:34 14000 of 50000, Atoms: 400(A), 258(P), ChiSq: 30038, Time: 00:00:22 / 00:00:35 15000 of 50000, Atoms: 399(A), 254(P), ChiSq: 29883, Time: 00:00:22 / 00:00:35 16000 of 50000, Atoms: 423(A), 256(P), ChiSq: 30000, Time: 00:00:22 / 00:00:34 17000 of 50000, Atoms: 411(A), 250(P), ChiSq: 30011, Time: 00:00:23 / 00:00:35 18000 of 50000, Atoms: 403(A), 262(P), ChiSq: 30018, Time: 00:00:23 / 00:00:35 19000 of 50000, Atoms: 415(A), 262(P), ChiSq: 29956, Time: 00:00:24 / 00:00:36 20000 of 50000, Atoms: 410(A), 247(P), ChiSq: 29980, Time: 00:00:24 / 00:00:35 21000 of 50000, Atoms: 407(A), 249(P), ChiSq: 29972, Time: 00:00:25 / 00:00:36 22000 of 50000, Atoms: 401(A), 256(P), ChiSq: 30011, Time: 00:00:25 / 00:00:35 23000 of 50000, Atoms: 407(A), 259(P), ChiSq: 29971, Time: 00:00:25 / 00:00:35 24000 of 50000, Atoms: 387(A), 238(P), ChiSq: 30058, Time: 00:00:26 / 00:00:36 25000 of 50000, Atoms: 419(A), 257(P), ChiSq: 29993, Time: 00:00:26 / 00:00:35 26000 of 50000, Atoms: 408(A), 254(P), ChiSq: 29973, Time: 00:00:26 / 00:00:35 27000 of 50000, Atoms: 396(A), 252(P), ChiSq: 29978, Time: 00:00:27 / 00:00:35 28000 of 50000, Atoms: 414(A), 264(P), ChiSq: 29994, Time: 00:00:27 / 00:00:35 29000 of 50000, Atoms: 402(A), 255(P), ChiSq: 29924, Time: 00:00:28 / 00:00:36 30000 of 50000, Atoms: 409(A), 249(P), ChiSq: 29992, Time: 00:00:28 / 00:00:35 31000 of 50000, Atoms: 396(A), 261(P), ChiSq: 29970, Time: 00:00:29 / 00:00:36 32000 of 50000, Atoms: 410(A), 254(P), ChiSq: 30027, Time: 00:00:29 / 00:00:36 33000 of 50000, Atoms: 406(A), 265(P), ChiSq: 29979, Time: 00:00:29 / 00:00:35 34000 of 50000, Atoms: 413(A), 252(P), ChiSq: 29990, Time: 00:00:30 / 00:00:36 35000 of 50000, Atoms: 422(A), 252(P), ChiSq: 29901, Time: 00:00:30 / 00:00:35 36000 of 50000, Atoms: 394(A), 262(P), ChiSq: 30009, Time: 00:00:30 / 00:00:35 37000 of 50000, Atoms: 379(A), 258(P), ChiSq: 30035, Time: 00:00:31 / 00:00:36 38000 of 50000, Atoms: 409(A), 257(P), ChiSq: 30005, Time: 00:00:31 / 00:00:35 39000 of 50000, Atoms: 394(A), 244(P), ChiSq: 30067, Time: 00:00:31 / 00:00:35 40000 of 50000, Atoms: 400(A), 254(P), ChiSq: 29995, Time: 00:00:32 / 00:00:35 41000 of 50000, Atoms: 397(A), 260(P), ChiSq: 29940, Time: 00:00:32 / 00:00:35 42000 of 50000, Atoms: 422(A), 254(P), ChiSq: 29944, Time: 00:00:32 / 00:00:35 43000 of 50000, Atoms: 392(A), 262(P), ChiSq: 30044, Time: 00:00:33 / 00:00:35 44000 of 50000, Atoms: 411(A), 260(P), ChiSq: 29989, Time: 00:00:33 / 00:00:35 45000 of 50000, Atoms: 411(A), 261(P), ChiSq: 30001, Time: 00:00:33 / 00:00:34 46000 of 50000, Atoms: 412(A), 242(P), ChiSq: 29967, Time: 00:00:34 / 00:00:35 47000 of 50000, Atoms: 394(A), 253(P), ChiSq: 29979, Time: 00:00:34 / 00:00:35 48000 of 50000, Atoms: 414(A), 266(P), ChiSq: 29987, Time: 00:00:34 / 00:00:34 49000 of 50000, Atoms: 407(A), 238(P), ChiSq: 29965, Time: 00:00:35 / 00:00:35 50000 of 50000, Atoms: 399(A), 247(P), ChiSq: 29968, Time: 00:00:35 / 00:00:35 [1] "93 row names matched between data and loadings" [1] "Updated dimension of data: 93 9" [1] "93 row names matched between data and loadings" [1] "Updated dimension of data: 93 9" [1] "93 row names matched between data and loadings" [1] "Updated dimension of data: 93 9" [ FAIL 0 | WARN 13 | SKIP 0 | PASS 24 ] > > proc.time() user system elapsed 43.89 0.42 44.28 |
projectR.Rcheck/examples_i386/projectR-Ex.timings
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projectR.Rcheck/examples_x64/projectR-Ex.timings
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