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This page was generated on 2021-10-15 15:05:48 -0400 (Fri, 15 Oct 2021).

INSTALL results for plier on nebbiolo1

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raw results

Package 1402/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plier 1.62.0  (landing page)
Crispin Miller
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/plier
git_branch: RELEASE_3_13
git_last_commit: 405f847
git_last_commit_date: 2021-05-19 11:35:20 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: plier
Version: 1.62.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL plier
StartedAt: 2021-10-14 06:05:30 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 06:05:39 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 8.9 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL plier
###
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘plier’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c affyplier.cpp -o affyplier.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c plier_impl.cpp -o plier_impl.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function ‘long int NewtonPlier(plier_data*, double&)’:
plieralg.cpp:905:14: warning: variable ‘icount’ set but not used [-Wunused-but-set-variable]
  905 |  long count, icount;
      |              ^~~~~~
plieralg.cpp: At global scope:
plieralg.cpp:49:12: warning: ‘g_ErrorCode’ defined but not used [-Wunused-variable]
   49 | static int g_ErrorCode=NoError;
      |            ^~~~~~~~~~~
plieralg.cpp: In function ‘long int NewtonPlier(plier_data*, double&)’:
plieralg.cpp:1257:24: warning: ‘LogLikelihood’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1257 |  output = LogLikelihood/nSize;
      |           ~~~~~~~~~~~~~^~~~~~
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c rwrapper.cpp -o rwrapper.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o plier.so affyplier.o plier_impl.o plieralg.o rwrapper.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-plier/00new/plier/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plier)