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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:muscat.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings muscat_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/muscat.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'muscat/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'muscat' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'muscat' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
simData       19.11   0.22   19.33
prepSim       13.03   0.32   13.35
mmDS          10.94   0.42   17.58
pbHeatmap      8.31   0.20    8.52
aggregateData  4.78   0.58    5.36
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
simData   17.68   0.25   17.94
prepSim   13.59   0.19   13.78
mmDS      10.75   0.03   10.78
pbHeatmap  8.46   0.05    8.50
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  `actual`:   FALSE
  `expected`: TRUE 
  -- Failure (test-resDS.R:35:9): resDS() ----------------------------------------
  nrow(z) not identical to v[[bind]]$nr.
  1/1 mismatches
  [1] 800 - 1000 == -200
  -- Failure (test-resDS.R:36:9): resDS() ----------------------------------------
  all(table(z$gene) == v[[bind]]$nk) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 4 | WARN 1 | SKIP 0 | PASS 545 ]
  Error: Test failures
  Execution halted
** running tests for arch 'x64' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  `actual`:   FALSE
  `expected`: TRUE 
  -- Failure (test-resDS.R:35:9): resDS() ----------------------------------------
  nrow(z) not identical to v[[bind]]$nr.
  1/1 mismatches
  [1] 800 - 1000 == -200
  -- Failure (test-resDS.R:36:9): resDS() ----------------------------------------
  all(table(z$gene) == v[[bind]]$nk) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 4 | WARN 1 | SKIP 0 | PASS 545 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/muscat.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/muscat_1.6.0.tar.gz && rm -rf muscat.buildbin-libdir && mkdir muscat.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=muscat.buildbin-libdir muscat_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL muscat_1.6.0.zip && rm muscat_1.6.0.tar.gz muscat_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2034k  100 2034k    0     0  3160k      0 --:--:-- --:--:-- --:--:-- 3163k

install for i386

* installing *source* package 'muscat' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
  Package version inconsistency detected.
glmmTMB was built with TMB version 1.7.21
Current TMB version is 1.7.22
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
** help
*** installing help indices
  converting help for package 'muscat'
    finding HTML links ... done
    aggregateData                           html  
    calcExprFreqs                           html  
    data                                    html  
    mmDS                                    html  
    pbDS                                    html  
    pbFlatten                               html  
    pbHeatmap                               html  
    finding level-2 HTML links ... done

    pbMDS                                   html  
    prepSCE                                 html  
    prepSim                                 html  
    resDS                                   html  
    simData                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
  Package version inconsistency detected.
glmmTMB was built with TMB version 1.7.21
Current TMB version is 1.7.22
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
** testing if installed package can be loaded from final location
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
  Package version inconsistency detected.
glmmTMB was built with TMB version 1.7.21
Current TMB version is 1.7.22
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'muscat' ...
** testing if installed package can be loaded
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
  Package version inconsistency detected.
glmmTMB was built with TMB version 1.7.21
Current TMB version is 1.7.22
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
* MD5 sums
packaged installation of 'muscat' as muscat_1.6.0.zip
* DONE (muscat)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'muscat' successfully unpacked and MD5 sums checked