Anand Mayakonda
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/maftools |
| git_branch: RELEASE_3_13 |
| git_last_commit: 0c14f2a |
| git_last_commit_date: 2021-09-07 06:38:12 -0400 (Tue, 07 Sep 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:41 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the maftools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maftools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1021/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maftools 2.8.05 (landing page) Anand Mayakonda
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: maftools |
| Version: 2.8.05 |
| Command: rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maftools_2.8.05.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maftools.buildbin-libdir |
| StartedAt: 2021-10-15 02:56:56 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 02:57:55 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 58.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: maftools_2.8.05.tgz |
| PackageFileSize: 10.88 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maftools_2.8.05.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maftools.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=maftools.buildbin-libdir maftools_2.8.05.tar.gz' >>>>>>> * installing *source* package ‘maftools’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/zlibbioc/include' -I/usr/local/include -fPIC -Wall -g -O2 -c ntcounts.c -o ntcounts.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/zlibbioc/include' -I/usr/local/include -fPIC -Wall -g -O2 -c somaticfreq.c -o somaticfreq.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o maftools.so ntcounts.o somaticfreq.o /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhtslib/usrlib/libhts.a -lcurl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.13-bioc/meat/maftools.buildbin-libdir/00LOCK-maftools/00new/maftools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maftools) >>>>>>> >>>>>>> FIXING LINKS FOR maftools.buildbin-libdir/maftools/libs/maftools.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "maftools.buildbin-libdir/maftools/libs/maftools.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "maftools.buildbin-libdir/maftools/libs/maftools.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "maftools.buildbin-libdir/maftools/libs/maftools.so"