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This page was generated on 2021-10-15 15:05:43 -0400 (Fri, 15 Oct 2021).

BUILD results for imageHTS on nebbiolo1

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/imageHTS.git to
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raw results

Package 910/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
imageHTS 1.42.0  (landing page)
Joseph Barry
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/imageHTS
git_branch: RELEASE_3_13
git_last_commit: f7a9006
git_last_commit_date: 2021-05-19 11:46:03 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: imageHTS
Version: 1.42.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data imageHTS
StartedAt: 2021-10-14 07:30:57 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 07:33:34 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 157.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data imageHTS
###
##############################################################################
##############################################################################


* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* preparing ‘imageHTS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘imageHTS-introduction.Rnw’ using Sweave
Loading required package: EBImage

Attaching package: ‘EBImage’

The following object is masked _by_ ‘.GlobalEnv’:

    display

Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: ‘Biobase’

The following object is masked from ‘package:EBImage’:

    channel

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.4 	 2020-03-24
Loading required package: grid
trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/imageconf.txt'
Content type 'text/plain; charset=UTF-8' length 374 bytes
==================================================
downloaded 374 bytes

trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/description.txt'
Warning in fileHTS(object, type = "file", filename = descripFile, access = access) :
  cannot download the file pointed by "http://www.huber.embl.de/cellmorph/kimorph//conf/description.txt" to the location "/tmp/Rtmp9M5PjR/kimorph/conf/description.txt"
trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/plateconf.txt'
Content type 'text/plain; charset=UTF-8' length 415 bytes
==================================================
downloaded 415 bytes

trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/screenlog.txt'
Content type 'text/plain; charset=UTF-8' length 110 bytes
==================================================
downloaded 110 bytes


Error: processing vignette 'imageHTS-introduction.Rnw' failed with diagnostics:
 chunk 28 (label = init) 
Error in (function (filename, path, ...)  : 
  The file 'description.txt' could not be found in the given path '/tmp/Rtmp9M5PjR/kimorph/conf'.

--- failed re-building ‘imageHTS-introduction.Rnw’

SUMMARY: processing the following file failed:
  ‘imageHTS-introduction.Rnw’

Error: Vignette re-building failed.
Execution halted