Back to Multiple platform build/check report for BioC 3.13
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-15 15:06:06 -0400 (Fri, 15 Oct 2021).

INSTALL results for genphen on tokay2

To the developers/maintainers of the genphen package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genphen.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 752/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genphen 1.20.0  (landing page)
Simo Kitanovski
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/genphen
git_branch: RELEASE_3_13
git_last_commit: 33793d8
git_last_commit_date: 2021-05-19 12:19:10 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: genphen
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/genphen_1.20.0.tar.gz && rm -rf genphen.buildbin-libdir && mkdir genphen.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genphen.buildbin-libdir genphen_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL genphen_1.20.0.zip && rm genphen_1.20.0.tar.gz genphen_1.20.0.zip
StartedAt: 2021-10-14 08:26:02 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 08:27:22 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 80.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/genphen_1.20.0.tar.gz && rm -rf genphen.buildbin-libdir && mkdir genphen.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genphen.buildbin-libdir genphen_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL genphen_1.20.0.zip && rm genphen_1.20.0.tar.gz genphen_1.20.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 53630  100 53630    0     0   338k      0 --:--:-- --:--:-- --:--:--  337k

install for i386

* installing *source* package 'genphen' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'genphen'
    finding HTML links ... done
    dichotomous.phenotype.saap              html  
    genotype.saap                           html  
    genotype.saap.msa                       html  
    genotype.snp                            html  
    genotype.snp.msa                        html  
    phenotype.saap                          html  
    phenotype.snp                           html  
    runDiagnostics                          html  
    runGenphen                              html  
    runPhyloBiasCheck                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'genphen' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genphen' as genphen_1.20.0.zip
* DONE (genphen)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'genphen' successfully unpacked and MD5 sums checked