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This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).

INSTALL results for gcrma on tokay2

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raw results

Package 696/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gcrma 2.64.0  (landing page)
Z. Wu
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/gcrma
git_branch: RELEASE_3_13
git_last_commit: 9914de3
git_last_commit_date: 2021-05-19 11:33:18 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: gcrma
Version: 2.64.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/gcrma_2.64.0.tar.gz && rm -rf gcrma.buildbin-libdir && mkdir gcrma.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcrma.buildbin-libdir gcrma_2.64.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL gcrma_2.64.0.zip && rm gcrma_2.64.0.tar.gz gcrma_2.64.0.zip
StartedAt: 2021-10-14 07:52:28 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 07:53:24 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 56.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/gcrma_2.64.0.tar.gz && rm -rf gcrma.buildbin-libdir && mkdir gcrma.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcrma.buildbin-libdir gcrma_2.64.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL gcrma_2.64.0.zip && rm gcrma_2.64.0.tar.gz gcrma_2.64.0.zip
###
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install for i386

* installing *source* package 'gcrma' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c baseProfile.c -o baseProfile.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c computeAffinities.c -o computeAffinities.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c postmean.c -o postmean.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/gcrma.buildbin-libdir/00LOCK-gcrma/00new/gcrma/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gcrma'
    finding HTML links ... done
    affinity.spline.coefs                   html  
    bg.adjust.affinities                    html  
    bg.adjust.gcrma                         html  
    bg.parameters.ns                        html  
    compute.affinities                      html  
    fast.bkg                                html  
    gcrma                                   html  
    gcrma.engine                            html  
    gcrma.engine2                           html  
    getCDF                                  html  
    justGCRMA                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gcrma' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c baseProfile.c -o baseProfile.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c computeAffinities.c -o computeAffinities.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c postmean.c -o postmean.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/gcrma.buildbin-libdir/gcrma/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gcrma' as gcrma_2.64.0.zip
* DONE (gcrma)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'gcrma' successfully unpacked and MD5 sums checked