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This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for flowPeaks on tokay2

To the developers/maintainers of the flowPeaks package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 657/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.38.0  (landing page)
Yongchao Ge
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/flowPeaks
git_branch: RELEASE_3_13
git_last_commit: 214f2c7
git_last_commit_date: 2021-05-19 11:52:40 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: flowPeaks
Version: 1.38.0
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.38.0.tar.gz
StartedAt: 2021-10-15 09:21:19 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 09:22:45 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 86.4 seconds
RetCode: 0
Status:   OK  
PackageFile: flowPeaks_1.38.0.zip
PackageFileSize: 2.625 MiB

Command output

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###
### Running command:
###
###   rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.38.0.tar.gz
###
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install for i386

* installing *source* package 'flowPeaks' ...
** using staged installation
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386/Rscript.exe" "../tools/winlibs.R"	
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  if(levels.size()<(i+1)){
     ~~~~~~~~~~~~~^~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rregistrate.cpp -o Rregistrate.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)':
VoronoiDiagramGenerator.cpp:803:5: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  if(!triangulate & plot & !debug)
     ^~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c flowPeaks.cpp -o flowPeaks.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c func_collect.cpp -o func_collect.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c func_collect_supp.cpp -o func_collect_supp.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kd_tree.cpp -o kd_tree.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kmns.cpp -o kmns.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/i386 -lgsl -lgslcblas -lm -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/flowPeaks.buildbin-libdir/00LOCK-flowPeaks/00new/flowPeaks/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'flowPeaks'
    finding HTML links ... done
    adjust.flowPeaks                        html  
    assign.flowPeaks                        html  
    barcode                                 html  
    concave                                 html  
    evalCluster                             html  
    flowPeaks                               html  
    plot.flowPeaks                          html  
    print.flowPeaks                         html  
    summary.flowPeaks                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64/Rscript.exe" "../tools/winlibs.R"	
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: 'std::map<int, int>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  if(levels.size()<(i+1)){
     ~~~~~~~~~~~~~^~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rregistrate.cpp -o Rregistrate.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)':
VoronoiDiagramGenerator.cpp:803:5: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
  if(!triangulate & plot & !debug)
     ^~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c flowPeaks.cpp -o flowPeaks.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c func_collect.cpp -o func_collect.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c func_collect_supp.cpp -o func_collect_supp.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kd_tree.cpp -o kd_tree.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c kmns.cpp -o kmns.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.38.0.zip
* DONE (flowPeaks)