Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:34 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the drugTargetInteractions package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drugTargetInteractions.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 535/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
drugTargetInteractions 1.0.2 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: drugTargetInteractions |
Version: 1.0.2 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings drugTargetInteractions_1.0.2.tar.gz |
StartedAt: 2021-10-14 18:36:39 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 18:43:09 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 390.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: drugTargetInteractions.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings drugTargetInteractions_1.0.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/drugTargetInteractions.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘drugTargetInteractions/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘drugTargetInteractions’ version ‘1.0.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘drugTargetInteractions’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .getCacheFile: no visible binding for global variable 'create_time' getParalogs: no visible global function definition for 'setNames' Undefined global functions or variables: create_time setNames Consider adding importFrom("stats", "setNames") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed drugTargetAnnotTable 54.049 0.891 54.987 processDrugage 42.483 0.329 43.650 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/drugTargetInteractions.Rcheck/00check.log’ for details.
drugTargetInteractions.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL drugTargetInteractions ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘drugTargetInteractions’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (drugTargetInteractions)
drugTargetInteractions.Rcheck/drugTargetInteractions-Ex.timings
name | user | system | elapsed | |
cmpIdMapping | 0.001 | 0.000 | 0.000 | |
downloadChemblDb | 0.000 | 0.001 | 0.000 | |
downloadUniChem | 2.596 | 0.176 | 3.413 | |
drugTargetAnnot | 0.794 | 0.004 | 0.800 | |
drugTargetAnnotTable | 54.049 | 0.891 | 54.987 | |
drugTargetBioactivity | 0.124 | 0.006 | 0.129 | |
genConfig | 0.000 | 0.001 | 0.000 | |
getDrugTarget | 0.025 | 0.003 | 0.028 | |
getParalogs | 0.000 | 0.000 | 0.001 | |
getSymEnsUp | 2.106 | 0.137 | 2.250 | |
getUniprotIDs | 0 | 0 | 0 | |
processDrugage | 42.483 | 0.329 | 43.650 | |
runDrugTarget_Annot_Bioassay | 0.665 | 0.025 | 0.694 | |
transformTTD | 4.192 | 0.261 | 4.667 | |