ake.vastermark
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/doseR |
| git_branch: RELEASE_3_13 |
| git_last_commit: ddab3b7 |
| git_last_commit_date: 2021-05-19 12:41:19 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:03 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the doseR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/doseR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 529/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| doseR 1.8.0 (landing page) ake.vastermark
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: doseR |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:doseR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings doseR_1.8.0.tar.gz |
| StartedAt: 2021-10-14 22:31:01 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 22:34:43 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 222.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: doseR.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:doseR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings doseR_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/doseR.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'doseR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'doseR' version '1.8.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'doseR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running '1.R' OK ** running tests for arch 'x64' ... Running '1.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
doseR.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/doseR_1.8.0.tar.gz && rm -rf doseR.buildbin-libdir && mkdir doseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=doseR.buildbin-libdir doseR_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL doseR_1.8.0.zip && rm doseR_1.8.0.tar.gz doseR_1.8.0.zip
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install for i386
* installing *source* package 'doseR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'doseR'
finding HTML links ... done
dafs html
dafsFilter html
generateStats html
getLibsizes3 html
glSeq html
hmel.dat html
iqrxFilter html
make_RPKM html
plotExpr html
plotMA.se html
plotRatioBoxes html
plotRatioDensity html
quantFilter html
se.DM html
se html
simpleFilter html
test_diffs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'doseR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'doseR' as doseR_1.8.0.zip
* DONE (doseR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'doseR' successfully unpacked and MD5 sums checked
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doseR.Rcheck/tests_i386/1.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > library(doseR) > > data(hmel.se) > f_se <- quantFilter(se, lo.bound = 0.4, hi.bound = 0.5) Filtering removed 12660 (92.96%) of 13619 total loci. > dm <- se.DM(f_se) > temp <- glSeq(dm, "-1 + replicate") > > RUnit::checkEqualsNumeric(round(temp@optinfo$val[4], 1), round(6.008, 1)) [1] TRUE > RUnit::checkEqualsNumeric(round(temp@optinfo$val[5], 1), round(5.840, 1)) [1] TRUE > > proc.time() user system elapsed 10.25 0.85 11.09 |
doseR.Rcheck/tests_x64/1.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > library(doseR) > > data(hmel.se) > f_se <- quantFilter(se, lo.bound = 0.4, hi.bound = 0.5) Filtering removed 12660 (92.96%) of 13619 total loci. > dm <- se.DM(f_se) > temp <- glSeq(dm, "-1 + replicate") > > RUnit::checkEqualsNumeric(round(temp@optinfo$val[4], 1), round(6.008, 1)) [1] TRUE > RUnit::checkEqualsNumeric(round(temp@optinfo$val[5], 1), round(5.840, 1)) [1] TRUE > > proc.time() user system elapsed 11.51 0.23 11.73 |
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doseR.Rcheck/examples_i386/doseR-Ex.timings
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doseR.Rcheck/examples_x64/doseR-Ex.timings
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