Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:32 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the condiments package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/condiments.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 375/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
condiments 1.0.0 (landing page) Hector Roux de Bezieux
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: condiments |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:condiments.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings condiments_1.0.0.tar.gz |
StartedAt: 2021-10-14 17:44:16 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 17:52:09 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 473.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: condiments.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:condiments.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings condiments_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/condiments.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘condiments/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘condiments’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘condiments’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .differentiationTest: no visible binding for global variable ‘pair’ .differentiationTest: no visible binding for global variable ‘statistic’ .differentiationTest: no visible binding for global variable ‘p.value’ .progressionTest: no visible binding for global variable ‘lineage’ .progressionTest: no visible binding for global variable ‘statistic’ .progressionTest: no visible binding for global variable ‘p.value’ Undefined global functions or variables: lineage p.value pair statistic * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed topologyTest 13.503 0.126 13.636 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/condiments.Rcheck/00check.log’ for details.
condiments.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL condiments ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘condiments’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (condiments)
condiments.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(condiments) > library(testthat) > test_check("condiments") note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 2 unique complexity parameters in default grid. Truncating the grid to 2 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 2 unique complexity parameters in default grid. Truncating the grid to 2 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 . [ FAIL 0 | WARN 0 | SKIP 0 | PASS 105 ] > > proc.time() user system elapsed 195.411 4.452 200.001
condiments.Rcheck/condiments-Ex.timings
name | user | system | elapsed | |
create_differential_topology | 0.006 | 0.001 | 0.007 | |
differentiationTest | 3.410 | 0.128 | 3.540 | |
imbalance_score | 0.268 | 0.008 | 0.275 | |
merge_sds | 1.162 | 0.069 | 1.231 | |
nLineages | 0.416 | 0.009 | 0.426 | |
progressionTest | 0.581 | 0.011 | 0.593 | |
slingshot_conditions | 1.263 | 0.025 | 1.288 | |
topologyTest | 13.503 | 0.126 | 13.636 | |
weights_from_pst | 0.388 | 0.011 | 0.399 | |