Multiple platform build/check report for BioC 3.13 - CHECK results for coMET on tokay2

Package: coMET

Version: 1.24.0

Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:coMET.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings coMET_1.24.0.tar.gz

StartedAt: 2021-10-14 21:26:45 -0400 (Thu, 14 Oct 2021)

EndedAt: 2021-10-14 21:38:48 -0400 (Thu, 14 Oct 2021)

EllapsedTime: 722.9 seconds

RetCode: 0

Status: OK

CheckDir: coMET.Rcheck

Warnings: 0

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:coMET.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings coMET_1.24.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'coMET/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'coMET' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'coMET' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.1Mb
  sub-directories of 1Mb or more:
    data      7.9Mb
    extdata  10.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
draw.plot.annotation : <anonymous>: no visible global function
  definition for 'ggplotGrob'
draw.plot.annotation: no visible global function definition for
  'viewTracks'
draw.plot.annotation: no visible global function definition for
  'trackList'
eQTL: no visible binding for global variable 'chromosome_stop'
eQTL: no visible binding for global variable 'chromosome_start'
eQTL: no visible binding for global variable 'chromosome_name'
eQTL_GTEx: no visible binding for global variable 'snp_pos'
eQTL_GTEx: no visible binding for global variable 'snp_chrom'
eQTL_GTEx: no visible binding for global variable 'gene_start'
eQTL_GTEx: no visible binding for global variable 'gene_stop'
eQTL_GTEx: no visible binding for global variable 'gene_chr'
geneExpression_GTEx: no visible global function definition for 'as'
metQTL: no visible binding for global variable 'chromosome_stop'
metQTL: no visible binding for global variable 'chromosome_start'
metQTL: no visible binding for global variable 'chromosome_name'
psiQTL_GTEx: no visible binding for global variable 'pos_snp'
psiQTL_GTEx: no visible binding for global variable 'chr_snp'
psiQTL_GTEx: no visible binding for global variable 'pos_middle_exon'
psiQTL_GTEx: no visible binding for global variable 'chr_exon'
Undefined global functions or variables:
  as chr_exon chr_snp chromosome_name chromosome_start chromosome_stop
  gene_chr gene_start gene_stop ggplotGrob pos_middle_exon pos_snp
  snp_chrom snp_pos trackList viewTracks
Consider adding
  importFrom("methods", "as")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
comet.web            15.32   0.36   40.47
coMET-package         6.76   0.47   11.54
chromatinHMMAll_UCSC  5.59   0.01    5.61
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
comet.web            14.03   0.14   38.67
coMET-package         7.08   0.17   11.64
HistoneAll_UCSC       5.62   0.00    5.63
chromatinHMMAll_UCSC  5.50   0.00    5.50
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.Rcheck/00check.log'
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/coMET_1.24.0.tar.gz && rm -rf coMET.buildbin-libdir && mkdir coMET.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=coMET.buildbin-libdir coMET_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL coMET_1.24.0.zip && rm coMET_1.24.0.tar.gz coMET_1.24.0.zip
###
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100 13.0M  100 13.0M    0     0  2869k      0  0:00:04  0:00:04 --:--:-- 2992k

install for i386

* installing *source* package 'coMET' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'coMET'
    finding HTML links ... done
    COSMIC_UCSC                             html  
    ChIPTF_ENCODE                           html  
    ClinVarCnv_UCSC                         html  
    ClinVarMain_UCSC                        html  
    CoreillCNV_UCSC                         html  
    DNAse_UCSC                              html  
    DNaseI_FANTOM                           html  
    DNaseI_RoadMap                          html  
    GAD_UCSC                                html  
    GWAScatalog_UCSC                        html  
    GeneReviews_UCSC                        html  
    HiCdata2matrix                          html  
    HistoneAll_UCSC                         html  
    HistoneOne_UCSC                         html  
    ISCA_UCSC                               html  
    TFBS_FANTOM                             html  
    bindingMotifsBiomart_ENSEMBL            html  
    check.configVar                         html  
    check.configVar.cometlist               html  
    check.format.mydata                     html  
    chrUCSC2ENSEMBL                         html  
    chromHMM_RoadMap                        html  
    chromatinHMMAll_UCSC                    html  
    chromatinHMMOne_UCSC                    html  
    coMET-package                           html  
    comet                                   html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/comet.html
    comet.list                              html  
    comet.web                               html  
    compute.cormatrix                       html  
    cpgIslands_UCSC                         html  
    cpgPvalue                               html  
    create.color.bar                        html  
    create.color.list                       html  
    create.color.list.large                 html  
    create.symbol.list                      html  
    create.symbol.list.large                html  
    create.tracks.user                      html  
    create.tracks.web                       html  
    createList.trackUser                    html  
    datasets                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/otherRegulatoryRegionsTrackAll.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/otherRegulatoryRegionsTrackSingle.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackAll.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackMultiple.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackSingle.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackAll.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackMultiple.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackSingle.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackAll.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackMultiple.html
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackSingle.html
    dgfootprints_RoadMap                    html  
    draw.legend                             html  
    draw.name.genes.web                     html  
    draw.name.tracks.web                    html  
    draw.plot.annotation                    html  
    draw.plot.axis.data                     html  
    draw.plot.comet                         html  
    draw.plot.comet.nopval                  html  
    draw.plot.comet.web                     html  
    draw.plot.cormatrix.plot                html  
    draw.plot.grid.mydata                   html  
    draw.plot.grid.mydata.large             html  
    draw.plot.grid.mydata.names             html  
    draw.plot.grid.setup                    html  
    draw.plot.linesconnection               html  
    draw.plot.mydata.ggbio                  html  
    eQTL                                    html  
    eQTL_GTEx                               html  
    fix.values                              html  
    fix.values.generic                      html  
    fix.values.large                        html  
    gcContent_UCSC                          html  
    genesName_ENSEMBL                       html  
    genes_ENSEMBL                           html  
    imprintedGenes_GTEx                     html  
    interestGenes_ENSEMBL                   html  
    interestTranscript_ENSEMBL              html  
    knownGenes_UCSC                         html  
    metQTL                                  html  
    miRNATargetRegionsBiomart_ENSEMBL       html  
    otherRegulatoryRegionsBiomart_ENSEMBL   html  
    printPlot.comet                         html  
    printPlot.comet.nopval                  html  
    printPlot.comet.web                     html  
    psiQTL_GTEx                             html  
    read.config                             html  
    read.file.cormatrix                     html  
    read.file.mydata                        html  
    read.file.mydata.large                  html  
    refGenes_UCSC                           html  
    regulationBiomart_ENSEMBL               html  
    regulatoryEvidenceBiomart_ENSEMBL       html  
    regulatoryFeaturesBiomart_ENSEMBL       html  
    regulatorySegmentsBiomart_ENSEMBL       html  
    repeatMasker_UCSC                       html  
    retrieve.data                           html  
    segmentalDups_UCSC                      html  
    set.image.parameters                    html  
    snpBiomart_ENSEMBL                      html  
    snpLocations_UCSC                       html  
    structureBiomart_ENSEMBL                html  
    transcript_ENSEMBL                      html  
    xenorefGenes_UCSC                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'coMET' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'coMET' as coMET_1.24.0.zip
* DONE (coMET)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'coMET' successfully unpacked and MD5 sums checked


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require("coMET") || stop("unable to load Package:coMET")
Loading required package: coMET
Loading required package: grid
Loading required package: biomaRt
Loading required package: Gviz
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min


Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: psych

Attaching package: 'psych'

The following object is masked from 'package:IRanges':

    reflect

[1] TRUE
> BiocGenerics:::testPackage("coMET")


RUNIT TEST PROTOCOL -- Thu Oct 14 21:38:15 2021 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
coMET RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  12.67    1.35   14.01


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require("coMET") || stop("unable to load Package:coMET")
Loading required package: coMET
Loading required package: grid
Loading required package: biomaRt
Loading required package: Gviz
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min


Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: psych

Attaching package: 'psych'

The following object is masked from 'package:IRanges':

    reflect

[1] TRUE
> BiocGenerics:::testPackage("coMET")


RUNIT TEST PROTOCOL -- Thu Oct 14 21:38:31 2021 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
coMET RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  14.14    0.64   14.75

name	user	system	elapsed
COSMIC_UCSC	1.91	0.19	2.09
ChIPTF_ENCODE	0.84	0.12	0.97
ClinVarCnv_UCSC	0.63	0.33	0.96
ClinVarMain_UCSC	0.51	0.28	0.79
CoreillCNV_UCSC	0.49	0.00	0.49
DNAse_UCSC	0.53	0.00	0.53
DNaseI_FANTOM	0.57	0.05	0.61
DNaseI_RoadMap	0.25	0.03	0.28
GAD_UCSC	0.48	0.00	0.49
GWAScatalog_UCSC	0.39	0.00	0.39
GeneReviews_UCSC	0.81	0.00	0.81
HiCdata2matrix	0.04	0.03	0.06
HistoneAll_UCSC	4.96	0.02	4.99
HistoneOne_UCSC	0.44	0.01	0.45
ISCA_UCSC	0.52	0.02	0.53
TFBS_FANTOM	0.41	0.00	0.40
bindingMotifsBiomart_ENSEMBL	0.16	0.00	0.16
chrUCSC2ENSEMBL	0	0	0
chromHMM_RoadMap	0.67	0.02	0.69
chromatinHMMAll_UCSC	5.59	0.01	5.61
chromatinHMMOne_UCSC	0.66	0.00	0.65
coMET-package	6.76	0.47	11.54
comet	3.50	0.19	3.68
comet.list	0.78	0.06	0.85
comet.web	15.32	0.36	40.47
cpgIslands_UCSC	0.28	0.00	0.28
dgfootprints_RoadMap	1.09	0.02	1.11
eQTL	1.21	0.01	1.21
eQTL_GTEx	1.48	0.02	1.50
gcContent_UCSC	1.33	0.01	1.35
genesName_ENSEMBL	0.01	0.00	0.01
genes_ENSEMBL	0.97	0.00	0.97
imprintedGenes_GTEx	4.25	0.06	4.32
interestGenes_ENSEMBL	0.75	0.00	0.75
interestTranscript_ENSEMBL	0.86	0.00	0.85
knownGenes_UCSC	0.94	0.00	0.94
metQTL	1.17	0.04	1.21
miRNATargetRegionsBiomart_ENSEMBL	0.05	0.01	0.06
otherRegulatoryRegionsBiomart_ENSEMBL	0.09	0.02	0.11
psiQTL_GTEx	1.11	0.01	1.14
refGenes_UCSC	0.97	0.00	0.97
regulationBiomart_ENSEMBL	0.42	0.00	0.42
regulatoryEvidenceBiomart_ENSEMBL	0.16	0.02	0.17
regulatoryFeaturesBiomart_ENSEMBL	0.15	0.00	0.16
regulatorySegmentsBiomart_ENSEMBL	0.16	0.00	0.15
repeatMasker_UCSC	0.61	0.00	0.61
segmentalDups_UCSC	0.48	0.00	0.48
snpBiomart_ENSEMBL	0.58	0.00	0.58
snpLocations_UCSC	1.36	0.03	1.39
structureBiomart_ENSEMBL	0.50	0.02	0.52
transcript_ENSEMBL	1.84	0.00	1.84
xenorefGenes_UCSC	0.64	0.01	0.66

name	user	system	elapsed
COSMIC_UCSC	2.13	0.11	2.24
ChIPTF_ENCODE	0.81	0.00	0.81
ClinVarCnv_UCSC	0.56	0.03	0.59
ClinVarMain_UCSC	0.55	0.01	0.57
CoreillCNV_UCSC	0.55	0.00	0.54
DNAse_UCSC	0.58	0.00	0.58
DNaseI_FANTOM	0.64	0.00	0.64
DNaseI_RoadMap	0.25	0.02	0.26
GAD_UCSC	0.54	0.00	0.55
GWAScatalog_UCSC	0.43	0.00	0.42
GeneReviews_UCSC	0.89	0.01	0.91
HiCdata2matrix	0.03	0.02	0.04
HistoneAll_UCSC	5.62	0.00	5.63
HistoneOne_UCSC	0.42	0.00	0.42
ISCA_UCSC	0.55	0.01	0.56
TFBS_FANTOM	0.59	0.00	0.60
bindingMotifsBiomart_ENSEMBL	0.18	0.02	0.18
chrUCSC2ENSEMBL	0	0	0
chromHMM_RoadMap	0.78	0.01	0.82
chromatinHMMAll_UCSC	5.5	0.0	5.5
chromatinHMMOne_UCSC	0.70	0.04	0.73
coMET-package	7.08	0.17	11.64
comet	3.76	0.06	3.83
comet.list	0.88	0.00	0.88
comet.web	14.03	0.14	38.67
cpgIslands_UCSC	0.17	0.00	0.17
dgfootprints_RoadMap	0.73	0.02	0.75
eQTL	1.57	0.03	1.60
eQTL_GTEx	1.4	0.0	1.4
gcContent_UCSC	1.36	0.00	1.36
genesName_ENSEMBL	0.02	0.00	0.02
genes_ENSEMBL	1.22	0.00	1.22
imprintedGenes_GTEx	4.56	0.03	4.59
interestGenes_ENSEMBL	0.81	0.00	0.81
interestTranscript_ENSEMBL	0.88	0.00	0.88
knownGenes_UCSC	1.03	0.00	1.03
metQTL	1.22	0.01	1.24
miRNATargetRegionsBiomart_ENSEMBL	0.06	0.00	0.06
otherRegulatoryRegionsBiomart_ENSEMBL	0.11	0.00	0.11
psiQTL_GTEx	1.37	0.02	1.39
refGenes_UCSC	2.02	0.00	2.01
regulationBiomart_ENSEMBL	0.40	0.00	0.41
regulatoryEvidenceBiomart_ENSEMBL	0.14	0.02	0.16
regulatoryFeaturesBiomart_ENSEMBL	0.16	0.02	0.17
regulatorySegmentsBiomart_ENSEMBL	0.17	0.00	0.18
repeatMasker_UCSC	0.66	0.00	0.65
segmentalDups_UCSC	0.51	0.00	0.52
snpBiomart_ENSEMBL	0.60	0.00	0.59
snpLocations_UCSC	1.45	0.00	1.45
structureBiomart_ENSEMBL	0.52	0.00	0.52
transcript_ENSEMBL	1.72	0.00	1.72
xenorefGenes_UCSC	0.75	0.00	0.75

CHECK results for coMET on tokay2

Summary

Command output

Installation output

Tests output

Example timings