| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:57 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the annotatr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/annotatr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 69/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| annotatr 1.18.1 (landing page) Raymond G. Cavalcante
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: annotatr |
| Version: 1.18.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/annotatr_1.18.1.tar.gz && rm -rf annotatr.buildbin-libdir && mkdir annotatr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=annotatr.buildbin-libdir annotatr_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL annotatr_1.18.1.zip && rm annotatr_1.18.1.tar.gz annotatr_1.18.1.zip |
| StartedAt: 2021-10-14 11:01:15 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:02:23 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 67.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/annotatr_1.18.1.tar.gz && rm -rf annotatr.buildbin-libdir && mkdir annotatr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=annotatr.buildbin-libdir annotatr_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL annotatr_1.18.1.zip && rm annotatr_1.18.1.tar.gz annotatr_1.18.1.zip
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install for i386
* installing *source* package 'annotatr' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** help
*** installing help indices
converting help for package 'annotatr'
finding HTML links ... done
annotate_regions html
annotations html
annotatr html
annotatr_cache html
build_ah_annots html
build_annotations html
build_cpg_annots html
build_enhancer_annots html
build_gene_annots html
build_hmm_annots html
build_lncrna_annots html
builtin_annotations html
builtin_genomes html
check_annotations html
expand_annotations html
get_cellline_from_code html
get_cellline_from_shortcut html
get_orgdb_name html
get_txdb_name html
plot_annotation html
plot_categorical html
plot_coannotations html
plot_numerical html
plot_numerical_coannotations html
randomize_regions html
read_annotations html
read_regions html
reformat_hmm_codes html
subset_order_tbl html
summarize_annotations html
summarize_categorical html
summarize_numerical html
tidy_annotations html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'annotatr' ...
** testing if installed package can be loaded
Warning: replacing previous import 'AnnotationHub::hubUrl' by 'rtracklayer::hubUrl' when loading 'annotatr'
* MD5 sums
packaged installation of 'annotatr' as annotatr_1.18.1.zip
* DONE (annotatr)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'annotatr' successfully unpacked and MD5 sums checked