| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the Sushi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Sushi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1875/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Sushi 1.30.0 (landing page) Douglas H Phanstiel
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: Sushi |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Sushi_1.30.0.tar.gz && rm -rf Sushi.buildbin-libdir && mkdir Sushi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sushi.buildbin-libdir Sushi_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Sushi_1.30.0.zip && rm Sushi_1.30.0.tar.gz Sushi_1.30.0.zip |
| StartedAt: 2021-10-14 08:11:17 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:14:51 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 214.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Sushi_1.30.0.tar.gz && rm -rf Sushi.buildbin-libdir && mkdir Sushi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sushi.buildbin-libdir Sushi_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Sushi_1.30.0.zip && rm Sushi_1.30.0.tar.gz Sushi_1.30.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 4020k 0 15985 0 0 134k 0 0:00:29 --:--:-- 0:00:29 134k
46 4020k 46 1881k 0 0 1662k 0 0:00:02 0:00:01 0:00:01 1663k
100 4020k 100 4020k 0 0 2064k 0 0:00:01 0:00:01 --:--:-- 2065k
install for i386
* installing *source* package 'Sushi' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Sushi'
finding HTML links ... done
SushiColors html
Sushi_5C.bedpe html
Sushi_ChIAPET_pol2.bedpe html
Sushi_ChIPExo_CTCF.bedgraph html
Sushi_ChIPSeq_CTCF.bedgraph html
Sushi_ChIPSeq_pol2.bed html
Sushi_ChIPSeq_pol2.bedgraph html
Sushi_ChIPSeq_severalfactors.bed html
Sushi_DNaseI.bedgraph html
Sushi_GWAS.bed html
Sushi_HiC.matrix html
Sushi_RNASeq_K562.bedgraph html
Sushi_genes.bed html
Sushi_hg18_genome html
Sushi_transcripts.bed html
addlegend html
chromOffsets html
convertstrandinfo html
labelgenome html
labelplot html
maptocolors html
maptolwd html
opaque html
plotBed html
plotBedgraph html
plotBedpe html
plotGenes html
finding level-2 HTML links ... done
plotHic html
plotManhattan html
sortChrom html
zoombox html
zoomsregion html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Sushi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Sushi' as Sushi_1.30.0.zip
* DONE (Sushi)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Sushi' successfully unpacked and MD5 sums checked