Back to Multiple platform build/check report for BioC 3.13
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for StructuralVariantAnnotation on tokay2

To the developers/maintainers of the StructuralVariantAnnotation package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/StructuralVariantAnnotation.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1865/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
StructuralVariantAnnotation 1.8.2  (landing page)
Daniel Cameron
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/StructuralVariantAnnotation
git_branch: RELEASE_3_13
git_last_commit: 325f68f
git_last_commit_date: 2021-08-05 01:17:48 -0400 (Thu, 05 Aug 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: StructuralVariantAnnotation
Version: 1.8.2
Command: rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.8.2.tar.gz
StartedAt: 2021-10-15 12:02:54 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 12:04:25 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 91.5 seconds
RetCode: 0
Status:   OK  
PackageFile: StructuralVariantAnnotation_1.8.2.zip
PackageFileSize: 831.8 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf StructuralVariantAnnotation.buildbin-libdir && mkdir StructuralVariantAnnotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=StructuralVariantAnnotation.buildbin-libdir StructuralVariantAnnotation_1.8.2.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'StructuralVariantAnnotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'StructuralVariantAnnotation'
    finding HTML links ... done
    StructuralVariantAnnotation             html  
    align_breakpoints                       html  
    breakendRanges                          html  
    breakpointGRangesToVCF                  html  
    breakpointRanges                        html  
    breakpointgr2bedpe                      html  
    calculateReferenceHomology              html  
    countBreakpointOverlaps                 html  
    elementExtract                          html  
    extractBreakpointSequence               html  
    extractReferenceSequence                html  
    findBreakpointOverlaps                  html  
    findInsDupOverlaps                      html  
    findTransitiveCalls                     html  
    hasPartner                              html  
    isStructural                            html  
    isSymbolic                              html  
    numtDetect                              html  
    pairs2breakpointgr                      html  
    partner                                 html  
    rtDetect                                html  
    simpleEventLength                       html  
    simpleEventType                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'StructuralVariantAnnotation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'StructuralVariantAnnotation' as StructuralVariantAnnotation_1.8.2.zip
* DONE (StructuralVariantAnnotation)