Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-10-15 15:06:22 -0400 (Fri, 15 Oct 2021).

CHECK results for SigCheck on tokay2

To the developers/maintainers of the SigCheck package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SigCheck.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1756/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SigCheck 2.24.0  (landing page)
Rory Stark
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/SigCheck
git_branch: RELEASE_3_13
git_last_commit: 09d85c0
git_last_commit_date: 2021-05-19 12:08:48 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  ERROR    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SigCheck
Version: 2.24.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SigCheck.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings SigCheck_2.24.0.tar.gz
StartedAt: 2021-10-15 05:40:30 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 05:40:40 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 10.5 seconds
RetCode: 1
Status:   ERROR  
CheckDir: SigCheck.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SigCheck.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings SigCheck_2.24.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/SigCheck.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SigCheck/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SigCheck' version '2.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SigCheck' can be installed ... ERROR
Installation failed.
See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/SigCheck.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/SigCheck.Rcheck/00check.log'
for details.

Installation output

SigCheck.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SigCheck_2.24.0.tar.gz && rm -rf SigCheck.buildbin-libdir && mkdir SigCheck.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SigCheck.buildbin-libdir SigCheck_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SigCheck_2.24.0.zip && rm SigCheck_2.24.0.tar.gz SigCheck_2.24.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  111k  100  111k    0     0   521k      0 --:--:-- --:--:-- --:--:--  523k

install for i386

* installing *source* package 'SigCheck' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'signature' in package 'SigCheck'
** help
*** installing help indices
  converting help for package 'SigCheck'
    finding HTML links ... done
    SigCheck-package                        html  
    finding level-2 HTML links ...
Error: cannot open the connection
* removing 'C:/Users/biocbuild/bbs-3.13-bioc/meat/SigCheck.buildbin-libdir/SigCheck'

Tests output

Example timings