Qingzhou Zhang
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/SMAD |
| git_branch: RELEASE_3_13 |
| git_last_commit: 5591339 |
| git_last_commit_date: 2021-05-19 12:40:44 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:53 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the SMAD package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SMAD.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1792/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SMAD 1.8.0 (landing page) Qingzhou Zhang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SMAD |
| Version: 1.8.0 |
| Command: rm -rf SMAD.buildbin-libdir && mkdir SMAD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SMAD_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SMAD.buildbin-libdir |
| StartedAt: 2021-10-15 04:02:47 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 04:03:57 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 70.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: SMAD_1.8.0.tgz |
| PackageFileSize: 444.3 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SMAD.buildbin-libdir && mkdir SMAD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SMAD_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SMAD.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SMAD.buildbin-libdir SMAD_1.8.0.tar.gz' >>>>>>> * installing *source* package ‘SMAD’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c GetDICE.cpp -o GetDICE.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c GetPPN.cpp -o GetPPN.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SMAD.so GetDICE.o GetPPN.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.13-bioc/meat/SMAD.buildbin-libdir/00LOCK-SMAD/00new/SMAD/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SMAD) >>>>>>> >>>>>>> FIXING LINKS FOR SMAD.buildbin-libdir/SMAD/libs/SMAD.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "SMAD.buildbin-libdir/SMAD/libs/SMAD.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "SMAD.buildbin-libdir/SMAD/libs/SMAD.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "SMAD.buildbin-libdir/SMAD/libs/SMAD.so"