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This page was generated on 2021-10-15 15:06:21 -0400 (Fri, 15 Oct 2021).

INSTALL results for SCOPE on tokay2

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raw results

Package 1708/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SCOPE 1.4.0  (landing page)
Rujin Wang
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/SCOPE
git_branch: RELEASE_3_13
git_last_commit: 16e6b55
git_last_commit_date: 2021-05-19 12:49:33 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: SCOPE
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SCOPE_1.4.0.tar.gz && rm -rf SCOPE.buildbin-libdir && mkdir SCOPE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SCOPE.buildbin-libdir SCOPE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SCOPE_1.4.0.zip && rm SCOPE_1.4.0.tar.gz SCOPE_1.4.0.zip
StartedAt: 2021-10-14 10:33:43 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 10:34:38 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 55.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SCOPE_1.4.0.tar.gz && rm -rf SCOPE.buildbin-libdir && mkdir SCOPE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SCOPE.buildbin-libdir SCOPE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SCOPE_1.4.0.zip && rm SCOPE_1.4.0.tar.gz SCOPE_1.4.0.zip
###
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100  237k  100  237k    0     0   885k      0 --:--:-- --:--:-- --:--:--  884k

install for i386

* installing *source* package 'SCOPE' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** help
*** installing help indices
  converting help for package 'SCOPE'
    finding HTML links ... done
    QCmetric.scopeDemo                      html  
    Y_sim                                   html  
    coverageObj.scopeDemo                   html  
    get_bam_bed                             html  
    get_coverage_scDNA                      html  
    get_gc                                  html  
    get_gini                                html  
    get_mapp                                html  
    get_samp_QC                             html  
    iCN_sim                                 html  
    initialize_ploidy                       html  
    initialize_ploidy_group                 html  
    normObj.scopeDemo                       html  
    normalize_codex2_ns_noK                 html  
    normalize_scope                         html  
    normalize_scope_foreach                 html  
    normalize_scope_group                   html  
    perform_qc                              html  
    plot_EM_fit                             html  
    plot_iCN                                html  
    ref.scopeDemo                           html  
    ref_sim                                 html  
    segment_CBScs                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SCOPE' ...
** testing if installed package can be loaded
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
* MD5 sums
packaged installation of 'SCOPE' as SCOPE_1.4.0.zip
* DONE (SCOPE)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SCOPE' successfully unpacked and MD5 sums checked