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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PCAN.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings PCAN_1.20.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/PCAN.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PCAN/DESCRIPTION' ... OK
* this is package 'PCAN' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PCAN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
hpGeneListComp     387.32   0.18  387.60
hpGeneHeatmap      350.84   0.23  351.42
compareHPSets      296.55   0.23  296.80
traitDef             6.29   0.03    6.33
hpSetCompBestMatch   6.01   0.01    6.03
hpSetCompSummary     5.14   0.03    5.17
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
hpGeneListComp     408.11   0.23  408.35
hpGeneHeatmap      407.64   0.27  407.92
compareHPSets      351.03   0.16  351.20
hpSetCompBestMatch   6.42   0.05    6.47
geneDef              6.07   0.05    6.12
traitDef             5.43   0.03    5.47
hpByTrait            5.25   0.06    5.31
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PCAN_1.20.0.tar.gz && rm -rf PCAN.buildbin-libdir && mkdir PCAN.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCAN.buildbin-libdir PCAN_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PCAN_1.20.0.zip && rm PCAN_1.20.0.tar.gz PCAN_1.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 80 1859k   80 1502k    0     0  1987k      0 --:--:-- --:--:-- --:--:-- 1988k
100 1859k  100 1859k    0     0  2139k      0 --:--:-- --:--:-- --:--:-- 2139k

install for i386

* installing *source* package 'PCAN' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PCAN'
    finding HTML links ... done
    calcHpSim                               html  
    compareHPSets                           html  
    finding level-2 HTML links ... done

    computeHpIC                             html  
    geneByHp                                html  
    geneByTrait                             html  
    geneDef                                 html  
    hpByTrait                               html  
    hpDef                                   html  
    hpGeneHeatmap                           html  
    hpGeneListComp                          html  
    hpSetCompBestMatch                      html  
    hpSetCompSummary                        html  
    hp_ancestors                            html  
    hp_class                                html  
    hp_descendants                          html  
    hqStrNw                                 html  
    hsEntrezByRPath                         html  
    rPath                                   html  
    traitDef                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PCAN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PCAN' as PCAN_1.20.0.zip
* DONE (PCAN)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'PCAN' successfully unpacked and MD5 sums checked