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This page was generated on 2021-10-15 15:06:15 -0400 (Fri, 15 Oct 2021).

INSTALL results for PAST on tokay2

To the developers/maintainers of the PAST package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PAST.git to
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raw results

Package 1346/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PAST 1.8.0  (landing page)
Thrash Adam
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/PAST
git_branch: RELEASE_3_13
git_last_commit: f595850
git_last_commit_date: 2021-05-19 12:43:57 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: PAST
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PAST_1.8.0.tar.gz && rm -rf PAST.buildbin-libdir && mkdir PAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PAST.buildbin-libdir PAST_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PAST_1.8.0.zip && rm PAST_1.8.0.tar.gz PAST_1.8.0.zip
StartedAt: 2021-10-14 10:40:57 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 10:42:02 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 64.8 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PAST_1.8.0.tar.gz && rm -rf PAST.buildbin-libdir && mkdir PAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PAST.buildbin-libdir PAST_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PAST_1.8.0.zip && rm PAST_1.8.0.tar.gz PAST_1.8.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1  943k    1 15989    0     0   134k      0  0:00:07 --:--:--  0:00:07  134k
100  943k  100  943k    0     0  1827k      0 --:--:-- --:--:-- --:--:-- 1829k

install for i386

* installing *source* package 'PAST' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::stack' by 'utils::stack' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** help
*** installing help indices
  converting help for package 'PAST'
    finding HTML links ... done
    assign_SNPs_to_genes                    html  
    assign_chunk                            html  
    determine_linkage                       html  
    find_pathway_significance               html  
    find_representative_SNP                 html  
    find_representative_SNP_gene_pairing    html  
    load_GWAS_data                          html  
    load_LD                                 html  
    plot_pathways                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::stack' by 'utils::stack' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::stack' by 'utils::stack' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PAST' ...
** testing if installed package can be loaded
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::stack' by 'utils::stack' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
* MD5 sums
packaged installation of 'PAST' as PAST_1.8.0.zip
* DONE (PAST)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'PAST' successfully unpacked and MD5 sums checked