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This page was generated on 2021-10-15 15:06:14 -0400 (Fri, 15 Oct 2021).

INSTALL results for ORFhunteR on tokay2

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raw results

Package 1322/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ORFhunteR 1.0.0  (landing page)
Vasily V. Grinev
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/ORFhunteR
git_branch: RELEASE_3_13
git_last_commit: aacc377
git_last_commit_date: 2021-05-19 12:59:25 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ORFhunteR
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ORFhunteR_1.0.0.tar.gz && rm -rf ORFhunteR.buildbin-libdir && mkdir ORFhunteR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ORFhunteR.buildbin-libdir ORFhunteR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ORFhunteR_1.0.0.zip && rm ORFhunteR_1.0.0.tar.gz ORFhunteR_1.0.0.zip
StartedAt: 2021-10-14 10:34:44 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 10:36:35 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 110.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ORFhunteR_1.0.0.tar.gz && rm -rf ORFhunteR.buildbin-libdir && mkdir ORFhunteR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ORFhunteR.buildbin-libdir ORFhunteR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ORFhunteR_1.0.0.zip && rm ORFhunteR_1.0.0.tar.gz ORFhunteR_1.0.0.zip
###
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100  871k  100  871k    0     0  1791k      0 --:--:-- --:--:-- --:--:-- 1793k

install for i386

* installing *source* package 'ORFhunteR' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getBaoMetrics.cpp -o getBaoMetrics.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getCorrelationFactors.cpp -o getCorrelationFactors.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getPatternCount_V.cpp -o getPatternCount_V.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ORFhunteR.dll tmp.def RcppExports.o getBaoMetrics.o getCorrelationFactors.o getPatternCount_V.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ORFhunteR.buildbin-libdir/00LOCK-ORFhunteR/00new/ORFhunteR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ORFhunteR'
    finding HTML links ... done
    annotateORFs                            html  
    classifyORFsCandidates                  html  
    codonStartStop                          html  
    findORFs                                html  
    findPTCs                                html  
    getSeqORFs                              html  
    loadTrExper                             html  
    predictORF                              html  
    translateORFs                           html  
    vectorizeORFs                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ORFhunteR' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getBaoMetrics.cpp -o getBaoMetrics.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getCorrelationFactors.cpp -o getCorrelationFactors.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getPatternCount_V.cpp -o getPatternCount_V.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ORFhunteR.dll tmp.def RcppExports.o getBaoMetrics.o getCorrelationFactors.o getPatternCount_V.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ORFhunteR.buildbin-libdir/ORFhunteR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ORFhunteR' as ORFhunteR_1.0.0.zip
* DONE (ORFhunteR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'ORFhunteR' successfully unpacked and MD5 sums checked