Back to Multiple platform build/check report for BioC 3.13
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2021-10-15 15:06:13 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for MungeSumstats on tokay2

To the developers/maintainers of the MungeSumstats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MungeSumstats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1232/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MungeSumstats 1.0.1  (landing page)
Alan Murphy
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/MungeSumstats
git_branch: RELEASE_3_13
git_last_commit: c1fe775
git_last_commit_date: 2021-06-22 14:02:24 -0400 (Tue, 22 Jun 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MungeSumstats
Version: 1.0.1
Command: rm -rf MungeSumstats.buildbin-libdir && mkdir MungeSumstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MungeSumstats.buildbin-libdir MungeSumstats_1.0.1.tar.gz
StartedAt: 2021-10-15 10:37:47 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 10:39:12 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 84.9 seconds
RetCode: 0
Status:   OK  
PackageFile: MungeSumstats_1.0.1.zip
PackageFileSize: 470.8 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MungeSumstats.buildbin-libdir && mkdir MungeSumstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MungeSumstats.buildbin-libdir MungeSumstats_1.0.1.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'MungeSumstats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MungeSumstats'
    finding HTML links ... done
    check_allele_flip                       html  
    check_allele_merge                      html  
    check_bi_allelic                        html  
    check_chr                               html  
    check_col_order                         html  
    check_dup_bp                            html  
    check_dup_col                           html  
    check_dup_snp                           html  
    check_four_step_col                     html  
    check_info_score                        html  
    check_miss_data                         html  
    check_multi_gwas                        html  
    check_n_int                             html  
    check_n_num                             html  
    check_no_allele                         html  
    check_no_chr_bp                         html  
    check_no_rs_snp                         html  
    check_no_snp                            html  
    check_on_ref_genome                     html  
    check_row_snp                           html  
    check_signed_col                        html  
    check_small_p_val                       html  
    check_strand_ambiguous                  html  
    check_tab_delimited                     html  
    check_two_step_col                      html  
    check_vcf                               html  
    check_vital_col                         html  
    format_sumstats                         html  
    load_ref_genome_data                    html  
    load_snp_loc_data                       html  
    raw_ALSvcf                              html  
    raw_eduAttainOkbay                      html  
    standardise_sumstats_column_headers_crossplatform
                                            html  
    sumstatsColHeaders                      html  
    validate_parameters                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MungeSumstats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MungeSumstats' as MungeSumstats_1.0.1.zip
* DONE (MungeSumstats)