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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MSstatsSampleSize.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MSstatsSampleSize_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/MSstatsSampleSize.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSstatsSampleSize/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MSstatsSampleSize' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MSstatsSampleSize' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Functions or methods with usage in documentation object '.classification' but not in code:
  '.classification'

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                             old_size new_size compress
  classification_results.rda    1.8Mb    1.3Mb       xz
  simulated_datasets.rda        656Kb    511Kb       xz
  variance_estimation.rda       690Kb    320Kb       xz
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                    user system elapsed
designSampleSizeClassification      7.98   0.07    8.05
designSampleSizeClassificationPlots 3.97   0.22   66.06
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                    user system elapsed
designSampleSizeClassification      7.81   0.11    7.92
designSampleSizeClassificationPlots 4.64   0.28   69.78
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/MSstatsSampleSize.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MSstatsSampleSize_1.6.0.tar.gz && rm -rf MSstatsSampleSize.buildbin-libdir && mkdir MSstatsSampleSize.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsSampleSize.buildbin-libdir MSstatsSampleSize_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MSstatsSampleSize_1.6.0.zip && rm MSstatsSampleSize_1.6.0.tar.gz MSstatsSampleSize_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 36 3280k   36 1194k    0     0  1389k      0  0:00:02 --:--:--  0:00:02 1390k
100 3280k  100 3280k    0     0  1901k      0  0:00:01  0:00:01 --:--:-- 1902k

install for i386

* installing *source* package 'MSstatsSampleSize' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSstatsSampleSize'
    finding HTML links ... done
    MSstatsSampleSize                       html  
    OV_SRM_train                            html  
    OV_SRM_train_annotation                 html  
    classification_results                  html  
    designSampleSizeClassification          html  
    designSampleSizeClassificationPlots     html  
    designSampleSizeHypothesisTestingPlot   html  
    designSampleSizePCAplot                 html  
    dot-classification                      html  
    dot-classificationModel                 html  
    dot-classificationPerformance           html  
    dot-logGeneration                       html  
    dot-randomImputation                    html  
    dot-sampleSimulation                    html  
    estimateVar                             html  
    meanSDplot                              html  
    simulateDataset                         html  
    simulated_datasets                      html  
    variance_estimation                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MSstatsSampleSize' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSstatsSampleSize' as MSstatsSampleSize_1.6.0.zip
* DONE (MSstatsSampleSize)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'MSstatsSampleSize' successfully unpacked and MD5 sums checked