Carlos MartÃnez
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/MOSim |
| git_branch: RELEASE_3_13 |
| git_last_commit: c168670 |
| git_last_commit_date: 2021-05-19 12:45:41 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:12 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the MOSim package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MOSim.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1180/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MOSim 1.6.0 (landing page) Carlos MartÃnez
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MOSim |
| Version: 1.6.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MOSim.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MOSim_1.6.0.tar.gz |
| StartedAt: 2021-10-15 02:12:58 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 02:24:27 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 688.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MOSim.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MOSim.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings MOSim_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/MOSim.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MOSim/DESCRIPTION' ... OK
* this is package 'MOSim' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MOSim' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
omicSettings 66.15 0.75 66.91
plotProfile 60.39 0.39 60.78
mosim 42.50 0.16 42.66
omicResults 40.96 0.14 41.11
experimentalDesign 40.50 0.32 40.83
omicSim 7.65 0.06 7.72
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotProfile 57.82 0.61 58.42
omicSettings 55.16 2.66 57.81
omicResults 41.44 0.12 41.56
mosim 39.44 0.07 39.50
experimentalDesign 38.15 0.48 38.65
omicSim 5.57 0.14 5.72
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MOSim.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MOSim_1.6.0.tar.gz && rm -rf MOSim.buildbin-libdir && mkdir MOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MOSim.buildbin-libdir MOSim_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MOSim_1.6.0.zip && rm MOSim_1.6.0.tar.gz MOSim_1.6.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
32 4365k 32 1397k 0 0 1704k 0 0:00:02 --:--:-- 0:00:02 1704k
95 4365k 95 4171k 0 0 2292k 0 0:00:01 0:00:01 --:--:-- 2291k
100 4365k 100 4365k 0 0 2347k 0 0:00:01 0:00:01 --:--:-- 2347k
install for i386
* installing *source* package 'MOSim' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'simulate' in package 'MOSim'
** help
*** installing help indices
converting help for package 'MOSim'
finding HTML links ... done
MOSim-package html
MOSimulation-class html
MOSimulator-class html
Simulator-class html
experimentalDesign html
is.declared html
mosim html
omicData html
omicResults html
omicSettings html
omicSim html
plotProfile html
sampleData html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MOSim' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MOSim' as MOSim_1.6.0.zip
* DONE (MOSim)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'MOSim' successfully unpacked and MD5 sums checked
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MOSim.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(MOSim)
>
> test_check("MOSim")
Simulation settings of class MOSimulation:
- Default depth: 74
- Total genes: 200
- Dif. expressed genes: 30
- Replicates: 3
- Factor levels (groups): 2
- Time vector length: 5
Simulation settings of class MOSimulation:
- Default depth: 74
- Total genes: 200
- Dif. expressed genes: 30
- Replicates: 3
- Factor levels (groups): 2
- Time vector length: 5
Simulation settings of class MOSimulation:
- Default depth: 74
- Total genes: 20
- Dif. expressed genes: 3
- Replicates: 3
- Factor levels (groups): 2
- Time vector length: 3
Simulation settings of class MOSimulation:
- Default depth: 74
- Total genes: 300
- Dif. expressed genes: 45
- Replicates: 3
- Factor levels (groups): 2
- Time vector length: 5
== Skipped tests ===============================================================
* empty test (1)
[ FAIL 0 | WARN 1 | SKIP 1 | PASS 7 ]
>
> proc.time()
user system elapsed
27.79 0.65 28.43
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MOSim.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(MOSim)
>
> test_check("MOSim")
Simulation settings of class MOSimulation:
- Default depth: 74
- Total genes: 200
- Dif. expressed genes: 30
- Replicates: 3
- Factor levels (groups): 2
- Time vector length: 5
Simulation settings of class MOSimulation:
- Default depth: 74
- Total genes: 200
- Dif. expressed genes: 30
- Replicates: 3
- Factor levels (groups): 2
- Time vector length: 5
Simulation settings of class MOSimulation:
- Default depth: 74
- Total genes: 20
- Dif. expressed genes: 3
- Replicates: 3
- Factor levels (groups): 2
- Time vector length: 3
Simulation settings of class MOSimulation:
- Default depth: 74
- Total genes: 300
- Dif. expressed genes: 45
- Replicates: 3
- Factor levels (groups): 2
- Time vector length: 5
== Skipped tests ===============================================================
* empty test (1)
[ FAIL 0 | WARN 1 | SKIP 1 | PASS 7 ]
>
> proc.time()
user system elapsed
27.15 0.68 27.82
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MOSim.Rcheck/examples_i386/MOSim-Ex.timings
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MOSim.Rcheck/examples_x64/MOSim-Ex.timings
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