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This page was generated on 2021-10-15 15:06:09 -0400 (Fri, 15 Oct 2021).

CHECK results for IWTomics on tokay2

To the developers/maintainers of the IWTomics package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IWTomics.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 962/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IWTomics 1.16.0  (landing page)
Marzia A Cremona
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/IWTomics
git_branch: RELEASE_3_13
git_last_commit: 5299f73
git_last_commit_date: 2021-05-19 12:24:40 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: IWTomics
Version: 1.16.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IWTomics.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings IWTomics_1.16.0.tar.gz
StartedAt: 2021-10-15 01:00:25 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 01:06:23 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 358.5 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: IWTomics.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IWTomics.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings IWTomics_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/IWTomics.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IWTomics/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IWTomics' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IWTomics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  plot.IWTomicsData
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
IWTomicsTest       59.42   0.36   59.78
IWTomicsData-class 14.64   0.00   14.83
IWTomics-package   10.11   1.50   11.81
plotSummary         5.00   0.01    5.02
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
IWTomicsTest        67.24   0.48   67.72
IWTomicsData-class  14.59   0.03   14.63
IWTomics-package     9.16   1.19   10.34
smooth-IWTomicsData  2.62   0.03    5.86
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/IWTomics.Rcheck/00check.log'
for details.



Installation output

IWTomics.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/IWTomics_1.16.0.tar.gz && rm -rf IWTomics.buildbin-libdir && mkdir IWTomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IWTomics.buildbin-libdir IWTomics_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL IWTomics_1.16.0.zip && rm IWTomics_1.16.0.tar.gz IWTomics_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  683k  100  683k    0     0  1494k      0 --:--:-- --:--:-- --:--:-- 1497k

install for i386

* installing *source* package 'IWTomics' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'smooth' in package 'IWTomics'
** help
*** installing help indices
  converting help for package 'IWTomics'
    finding HTML links ... done
    ETn_example                             html  
    IWTomics-internal                       html  
    IWTomics-package                        html  
    IWTomicsData-class                      html  
    IWTomicsTest                            html  
    features_example                        html  
    plot-IWTomicsData                       html  
    plotSummary                             html  
    plotTest                                html  
    regionsFeatures_center                  html  
    regionsFeatures_scale                   html  
    regions_example                         html  
    smooth-IWTomicsData                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'IWTomics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IWTomics' as IWTomics_1.16.0.zip
* DONE (IWTomics)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'IWTomics' successfully unpacked and MD5 sums checked

Tests output


Example timings

IWTomics.Rcheck/examples_i386/IWTomics-Ex.timings

nameusersystemelapsed
ETn_example0.190.020.21
IWTomics-package10.11 1.5011.81
IWTomicsData-class14.64 0.0014.83
IWTomicsTest59.42 0.3659.78
features_example0.000.010.01
plot-IWTomicsData0.700.020.72
plotSummary5.000.015.02
plotTest3.620.003.63
regionsFeatures_center0.030.000.03
regionsFeatures_scale0.020.000.02
regions_example0.020.000.01
smooth-IWTomicsData2.590.052.80

IWTomics.Rcheck/examples_x64/IWTomics-Ex.timings

nameusersystemelapsed
ETn_example0.220.010.23
IWTomics-package 9.16 1.1910.34
IWTomicsData-class14.59 0.0314.63
IWTomicsTest67.24 0.4867.72
features_example000
plot-IWTomicsData0.800.020.82
plotSummary4.580.034.61
plotTest4.320.054.37
regionsFeatures_center0.040.000.03
regionsFeatures_scale0.030.000.03
regions_example000
smooth-IWTomicsData2.620.035.86