Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:42 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the HiCBricks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 856/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.10.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: HiCBricks |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings HiCBricks_1.10.0.tar.gz |
StartedAt: 2021-10-14 10:09:57 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:12:22 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 145.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings HiCBricks_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/HiCBricks.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.000 | 0.032 | 1.029 | |
BrickContainer_change_output_directory | 0.794 | 0.012 | 0.805 | |
BrickContainer_get_path_to_file | 0.836 | 0.080 | 0.915 | |
BrickContainer_list_chromosomes | 0.816 | 0.028 | 0.845 | |
BrickContainer_list_experiment_name | 0.829 | 0.016 | 0.845 | |
BrickContainer_list_files | 0.881 | 0.012 | 0.892 | |
BrickContainer_list_output_directory | 0.888 | 0.012 | 0.900 | |
BrickContainer_list_resolutions | 0.848 | 0.028 | 0.876 | |
BrickContainer_unlink_resolution | 1.723 | 0.076 | 1.798 | |
Brick_add_ranges | 1.692 | 0.048 | 1.740 | |
Brick_call_compartments | 1.225 | 0.060 | 1.288 | |
Brick_export_to_sparse | 3.674 | 0.152 | 3.825 | |
Brick_fetch_range_index | 1.099 | 0.020 | 1.120 | |
Brick_fetch_row_vector | 1.590 | 0.020 | 1.609 | |
Brick_get_bintable | 1.11 | 0.04 | 1.15 | |
Brick_get_chrominfo | 0.793 | 0.012 | 0.804 | |
Brick_get_entire_matrix | 1.145 | 0.067 | 1.213 | |
Brick_get_matrix | 1.007 | 0.060 | 1.067 | |
Brick_get_matrix_mcols | 0.968 | 0.016 | 0.984 | |
Brick_get_matrix_within_coords | 1.612 | 0.044 | 1.656 | |
Brick_get_ranges | 0.792 | 0.028 | 0.824 | |
Brick_get_values_by_distance | 1.170 | 0.052 | 1.222 | |
Brick_get_vector_values | 1.043 | 0.048 | 1.090 | |
Brick_list_matrices | 0.699 | 0.016 | 0.715 | |
Brick_list_matrix_mcols | 0.752 | 0.012 | 0.764 | |
Brick_list_mcool_normalisations | 0.000 | 0.001 | 0.001 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 0.731 | 0.006 | 0.736 | |
Brick_list_ranges_mcols | 0.704 | 0.032 | 0.736 | |
Brick_load_cis_matrix_till_distance | 0.919 | 0.044 | 0.963 | |
Brick_load_data_from_mcool | 0.001 | 0.000 | 0.001 | |
Brick_load_data_from_sparse | 0.001 | 0.000 | 0.001 | |
Brick_load_matrix | 1.007 | 0.016 | 1.022 | |
Brick_local_score_differentiator | 1.691 | 0.068 | 1.760 | |
Brick_make_ranges | 0.014 | 0.000 | 0.015 | |
Brick_matrix_dimensions | 1.068 | 0.040 | 1.108 | |
Brick_matrix_exists | 0.998 | 0.016 | 1.014 | |
Brick_matrix_filename | 0.997 | 0.024 | 1.021 | |
Brick_matrix_isdone | 0.979 | 0.024 | 1.002 | |
Brick_matrix_issparse | 0.972 | 0.032 | 1.004 | |
Brick_matrix_maxdist | 0.976 | 0.056 | 1.032 | |
Brick_matrix_minmax | 0.971 | 0.024 | 0.994 | |
Brick_mcool_normalisation_exists | 0.001 | 0.000 | 0.000 | |
Brick_rangekey_exists | 0.711 | 0.020 | 0.730 | |
Brick_return_region_position | 0.807 | 0.012 | 0.819 | |
Brick_vizart_plot_heatmap | 2.057 | 0.052 | 2.110 | |
Create_many_Bricks | 0.737 | 0.020 | 0.756 | |
Create_many_Bricks_from_mcool | 0.001 | 0.000 | 0.000 | |
load_BrickContainer | 0.799 | 0.016 | 0.815 | |