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This page was generated on 2021-10-15 15:06:06 -0400 (Fri, 15 Oct 2021).

INSTALL results for GlobalAncova on tokay2

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raw results

Package 777/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GlobalAncova 4.10.0  (landing page)
Manuela Hummel
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/GlobalAncova
git_branch: RELEASE_3_13
git_last_commit: 4854ac8
git_last_commit_date: 2021-05-19 11:36:25 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GlobalAncova
Version: 4.10.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GlobalAncova_4.10.0.tar.gz && rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GlobalAncova.buildbin-libdir GlobalAncova_4.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GlobalAncova_4.10.0.zip && rm GlobalAncova_4.10.0.tar.gz GlobalAncova_4.10.0.zip
StartedAt: 2021-10-14 09:25:52 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 09:27:03 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 70.6 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GlobalAncova_4.10.0.tar.gz && rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GlobalAncova.buildbin-libdir GlobalAncova_4.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GlobalAncova_4.10.0.zip && rm GlobalAncova_4.10.0.tar.gz GlobalAncova_4.10.0.zip
###
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install for i386

* installing *source* package 'GlobalAncova' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:166:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized]
   int *ord_perm ;
        ^~~~~~~~
GlobalAncova.c: In function 'permut':
GlobalAncova.c:268:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized]
   int *ord_perm ;
        ^~~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c ludcmp.c -o ludcmp.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c matrix.c -o matrix.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/GlobalAncova.buildbin-libdir/00LOCK-GlobalAncova/00new/GlobalAncova/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GlobalAncova'
    finding HTML links ... done
    GAhier-class                            html  
    GlobalAncova-methods                    html  
    GlobalAncova                            html  
    GlobalAncova.closed-methods             html  
    GlobalAncova.closed                     html  
    GlobalAncova.decomp                     html  
    Plot.all                                html  
    Plot.features                           html  
    Plot.genes-methods                      html  
    Plot.genes                              html  
    Plot.sequential                         html  
    Plot.subjects-methods                   html  
    Plot.subjects                           html  
    bindata                                 html  
    colon.normal                            html  
    colon.pheno                             html  
    colon.tumour                            html  
    gGlobalAncova                           html  
    gGlobalAncova.hierarchical              html  
    genesettesting                          html  
    pair.compare                            html  
    pathways                                html  
    phenodata                               html  
    vantVeer                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GlobalAncova' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:166:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized]
   int *ord_perm ;
        ^~~~~~~~
GlobalAncova.c: In function 'permut':
GlobalAncova.c:268:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized]
   int *ord_perm ;
        ^~~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c ludcmp.c -o ludcmp.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c matrix.c -o matrix.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/GlobalAncova.buildbin-libdir/GlobalAncova/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GlobalAncova' as GlobalAncova_4.10.0.zip
* DONE (GlobalAncova)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GlobalAncova' successfully unpacked and MD5 sums checked