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This page was generated on 2021-10-15 15:06:06 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the GenomicDataCommons package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicDataCommons.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 740/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GenomicDataCommons 1.16.0 (landing page) Sean Davis
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: GenomicDataCommons |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GenomicDataCommons_1.16.0.tar.gz && rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GenomicDataCommons_1.16.0.zip && rm GenomicDataCommons_1.16.0.tar.gz GenomicDataCommons_1.16.0.zip |
| StartedAt: 2021-10-14 09:55:28 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:56:06 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 37.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GenomicDataCommons_1.16.0.tar.gz && rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GenomicDataCommons_1.16.0.zip && rm GenomicDataCommons_1.16.0.tar.gz GenomicDataCommons_1.16.0.zip
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install for i386
* installing *source* package 'GenomicDataCommons' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicDataCommons'
finding HTML links ... done
GenomicDataCommons html
aggregations html
available_expand html
available_fields html
available_values html
constants html
count html
default_fields html
dot-htseq_importer html
entity_name html
expand html
faceting html
field_description html
filtering html
gdc_cache html
gdc_client html
gdc_clinical html
gdc_rnaseq html
gdc_token html
gdcdata html
grep_fields html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp42we3I/R.INSTALL22341b0a2198/GenomicDataCommons/man/grep_fields.Rd:10: missing link '.gdc_entities'
id_field html
ids html
make_filter html
manifest html
mapping html
query html
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp42we3I/R.INSTALL22341b0a2198/GenomicDataCommons/man/query.Rd:46: missing link 'facets'
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp42we3I/R.INSTALL22341b0a2198/GenomicDataCommons/man/query.Rd:53: missing link 'available_expands'
readDNAcopy html
readHTSeqFile html
response html
results html
results_all html
select html
slicing html
status html
transfer html
write_manifest html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicDataCommons' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicDataCommons' as GenomicDataCommons_1.16.0.zip
* DONE (GenomicDataCommons)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GenomicDataCommons' successfully unpacked and MD5 sums checked