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This page was generated on 2021-10-15 15:06:06 -0400 (Fri, 15 Oct 2021).

INSTALL results for GenVisR on tokay2

To the developers/maintainers of the GenVisR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenVisR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 753/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenVisR 1.24.0  (landing page)
Zachary Skidmore
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/GenVisR
git_branch: RELEASE_3_13
git_last_commit: 3b6abcf
git_last_commit_date: 2021-05-19 12:17:38 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    ERROR  
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GenVisR
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GenVisR_1.24.0.tar.gz && rm -rf GenVisR.buildbin-libdir && mkdir GenVisR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenVisR.buildbin-libdir GenVisR_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GenVisR_1.24.0.zip && rm GenVisR_1.24.0.tar.gz GenVisR_1.24.0.zip
StartedAt: 2021-10-14 10:41:26 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 10:43:07 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 101.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GenVisR_1.24.0.tar.gz && rm -rf GenVisR.buildbin-libdir && mkdir GenVisR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenVisR.buildbin-libdir GenVisR_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GenVisR_1.24.0.zip && rm GenVisR_1.24.0.tar.gz GenVisR_1.24.0.zip
###
##############################################################################
##############################################################################


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 34 2098k   34  718k    0     0  1912k      0  0:00:01 --:--:--  0:00:01 1910k
100 2098k  100 2098k    0     0  3093k      0 --:--:-- --:--:-- --:--:-- 3095k

install for i386

* installing *source* package 'GenVisR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenVisR'
    finding HTML links ... done
    Clinical-class                          html  
    GMS-class                               html  
    GMS_Virtual-class                       html  
    GMS_v4-class                            html  
    GenVisR                                 html  
    HCC1395_Germline                        html  
    HCC1395_N                               html  
    HCC1395_T                               html  
    Lolliplot-class                         html  
    LucCNseg                                html  
    MutSpectra-class                        html  
    MutationAnnotationFormat-class          html  
    MutationAnnotationFormat_Virtual-class
                                            html  
    MutationAnnotationFormat_v1.0-class     html  
    MutationAnnotationFormat_v2.0-class     html  
    MutationAnnotationFormat_v2.1-class     html  
    MutationAnnotationFormat_v2.2-class     html  
    MutationAnnotationFormat_v2.3-class     html  
    MutationAnnotationFormat_v2.4-class     html  
    PIK3CA                                  html  
    Rainfall-class                          html  
    SNPloci                                 html  
    TvTi                                    html  
    VEP-class                               html  
    VEP_Virtual-class                       html  
    VEP_v88-class                           html  
    Waterfall-class                         html  
    brcaMAF                                 html  
    cnFreq                                  html  
    cnSpec                                  html  
    cnView                                  html  
    compIdent                               html  
    covBars                                 html  
    cytoGeno                                html  
    drawPlot-methods                        html  
    genCov                                  html  
    geneViz                                 html  
    getData-methods                         html  
    getDescription-methods                  html  
    getGrob-methods                         html  
    getHeader-methods                       html  
    getMeta-methods                         html  
    getMutation-methods                     html  
    getPath-methods                         html  
    getPosition-methods                     html  
    getSample-methods                       html  
    getVersion-methods                      html  
    hg19chr                                 html  
    ideoView                                html  
    lohSpec                                 html  
    lohView                                 html  
    lolliplot                               html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/GenVisR.buildbin-libdir/00LOCK-GenVisR/00new/GenVisR/help/lolliplot.html
    lolliplot_AA2sidechain                  html  
    lolliplot_buildMain                     html  
    waterfall                               html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/GenVisR.buildbin-libdir/00LOCK-GenVisR/00new/GenVisR/help/waterfall.html
    writeData-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenVisR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenVisR' as GenVisR_1.24.0.zip
* DONE (GenVisR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GenVisR' successfully unpacked and MD5 sums checked