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This page was generated on 2021-10-15 15:05:40 -0400 (Fri, 15 Oct 2021).

INSTALL results for FunChIP on nebbiolo1

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raw results

Package 680/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FunChIP 1.18.0  (landing page)
Alice Parodi
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/FunChIP
git_branch: RELEASE_3_13
git_last_commit: 4981a2b
git_last_commit_date: 2021-05-19 12:20:50 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: FunChIP
Version: 1.18.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL FunChIP
StartedAt: 2021-10-14 06:34:34 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 06:35:07 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 32.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL FunChIP
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘FunChIP’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I/usr/local/include  `/home/biocbuild/bbs-3.13-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -fpic  -g -O2  -Wall -c kmean_function.cpp -o kmean_function.o
kmean_function.cpp: In function ‘SEXPREC* kmean_function(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
kmean_function.cpp:74:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   74 |     for (unsigned int i =0 ; i<num_data; i++){
      |                              ~^~~~~~~~~
kmean_function.cpp:80:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   80 |       for (unsigned int t =0 ; t < num_points; t++)
      |                                ~~^~~~~~~~~~~~
kmean_function.cpp: In function ‘SEXPREC* distance_matrix(SEXP, SEXP, SEXP, SEXP, SEXP)’:
kmean_function.cpp:210:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  210 |         for (unsigned int i =0 ; i<num_data; i++){
      |                                  ~^~~~~~~~~
kmean_function.cpp:216:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  216 |             for (unsigned int t =0 ; t < num_points; t++)
      |                                      ~~^~~~~~~~~~~~
kmean_function.cpp: In function ‘void kma_discrete(std::vector<peak>&, const int&, std::vector<int>&, const double&, const double&, const int&, const char&, const double&, const double&, std::vector<int>&, std::vector<double>&, std::vector<int>&, const double&, const double&, int, char, char)’:
kmean_function.cpp:638:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<peak>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  638 |   while( iter < iter_max and number_distances_low < dati.size()  and cluster_vuoti==0){  //and number_clusters_different > 0
      |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
kmean_function.cpp:677:52: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  677 |       if ( (unsigned int)number_clusters_different == dati.size() & iter != 1)
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
kmean_function.cpp:681:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<peak>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  681 |       if (number_distances_low== dati.size())
      |           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
kmean_function.cpp: In function ‘void normalize_data(std::vector<int>&, std::vector<int>&, const int&)’:
kmean_function.cpp:759:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  759 |   for (unsigned int i=0; i<n_clust; i++)
      |                          ~^~~~~~~~
In file included from kmean_function.cpp:1:
peak.h: In member function ‘std::vector<double> peak::area(int, char) const’:
peak.h:154:46: warning: ‘D’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  154 |                 area_def[0] = sqrt(area[0]/2)/D;
      |                               ~~~~~~~~~~~~~~~^~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o FunChIP.so kmean_function.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-FunChIP/00new/FunChIP/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FunChIP)