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This page was generated on 2021-10-15 15:06:34 -0400 (Fri, 15 Oct 2021).

BUILD results for ELBOW on machv2

To the developers/maintainers of the ELBOW package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELBOW.git to
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raw results

Package 564/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ELBOW 1.28.0  (landing page)
Graham Alvare , Xiangli Zhang
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/ELBOW
git_branch: RELEASE_3_13
git_last_commit: b174c21
git_last_commit_date: 2021-05-19 12:02:34 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ELBOW
Version: 1.28.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ELBOW
StartedAt: 2021-10-14 11:52:19 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 11:52:33 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 13.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ELBOW
###
##############################################################################
##############################################################################


* checking for file ‘ELBOW/DESCRIPTION’ ... OK
* preparing ‘ELBOW’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Elbow_tutorial_vignette.Rnw’ using Sweave
Warning: Package 'ELBOW' is deprecated and will be removed from Bioconductor
  version 3.14
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20986/suppl//GSE20986_RAW.tar?tool=geoquery'
Content type 'application/x-tar' length 56360960 bytes (53.8 MB)
==================================================
downloaded 53.8 MB


Error: processing vignette 'Elbow_tutorial_vignette.Rnw' failed with diagnostics:
 chunk 2 (label = load_limmma) 
Error in library("simpleaffy") : there is no package called ‘simpleaffy’

--- failed re-building ‘Elbow_tutorial_vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘Elbow_tutorial_vignette.Rnw’

Error: Vignette re-building failed.
Execution halted