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This page was generated on 2021-10-15 15:06:01 -0400 (Fri, 15 Oct 2021).

INSTALL results for CoRegFlux on tokay2

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raw results

Package 391/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoRegFlux 1.8.0  (landing page)
Pauline Trébulle and Mohamed Elati
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/CoRegFlux
git_branch: RELEASE_3_13
git_last_commit: 8f1dfd8
git_last_commit_date: 2021-05-19 12:41:32 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    ERROR  
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: CoRegFlux
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CoRegFlux_1.8.0.tar.gz && rm -rf CoRegFlux.buildbin-libdir && mkdir CoRegFlux.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoRegFlux.buildbin-libdir CoRegFlux_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CoRegFlux_1.8.0.zip && rm CoRegFlux_1.8.0.tar.gz CoRegFlux_1.8.0.zip
StartedAt: 2021-10-14 08:17:55 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 08:18:56 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 60.2 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CoRegFlux_1.8.0.tar.gz && rm -rf CoRegFlux.buildbin-libdir && mkdir CoRegFlux.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoRegFlux.buildbin-libdir CoRegFlux_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CoRegFlux_1.8.0.zip && rm CoRegFlux_1.8.0.tar.gz CoRegFlux_1.8.0.zip
###
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install for i386

* installing *source* package 'CoRegFlux' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CoRegFlux'
    finding HTML links ... done
    FBA_step                                html  
    ODCurveToFluxCurves                     html  
    ODCurveToMetabolicGeneCurves            html  
    ODToFluxBounds                          html  
    ODcurveToMetCurve                       html  
    ODtoflux                                html  
    PredictedGeneState                      html  
    SC_EXP_DATA                             html  
    SC_GRN_1                                html  
    SC_Test_data                            html  
    SC_experiment_influence                 html  
    Simulation                              html  
    Simulation_Step                         html  
    adjust_constraints_to_observed_rates    html  
    aliases_SC                              html  
    build_exchange_met                      html  
    continuous_gpr                          html  
    convert_metabolites_to_model_names      html  
    coregflux_static                        html  
    euler_step_biomass                      html  
    euler_step_metabolites                  html  
    get_biomass_flux_position               html  
    get_fba_fluxes_from_observations        html  
    get_fva_intervals_from_observations     html  
    get_linear_model                        html  
    get_metabolites_exchange_fluxes         html  
    gpr_expression                          html  
    iMM904                                  html  
    perturbation_function                   html  
    predict_linear_model_influence          html  
    train_continuous_model                  html  
    update_fluxes_constraints_GRegulation   html  
    update_fluxes_constraints_geneKOOV      html  
    update_fluxes_constraints_influence     html  
    update_fluxes_state                     html  
    update_system_state                     html  
    update_uptake_fluxes_constraints_metabolites
                                            html  
    visFluxCurves                           html  
    visMetabolicGeneCurves                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'CoRegFlux' is deprecated and will be removed from Bioconductor
  version 3.14
** testing if installed package can be loaded from final location
Warning: Package 'CoRegFlux' is deprecated and will be removed from Bioconductor
  version 3.14
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CoRegFlux' ...
** testing if installed package can be loaded
Warning: Package 'CoRegFlux' is deprecated and will be removed from Bioconductor
  version 3.14
* MD5 sums
packaged installation of 'CoRegFlux' as CoRegFlux_1.8.0.zip
* DONE (CoRegFlux)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CoRegFlux' successfully unpacked and MD5 sums checked