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This page was generated on 2021-10-15 15:05:59 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the CancerMutationAnalysis package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CancerMutationAnalysis.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 237/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Simina M. Boca
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
Package: CancerMutationAnalysis |
Version: 1.34.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CancerMutationAnalysis_1.34.0.tar.gz && rm -rf CancerMutationAnalysis.buildbin-libdir && mkdir CancerMutationAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CancerMutationAnalysis.buildbin-libdir CancerMutationAnalysis_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CancerMutationAnalysis_1.34.0.zip && rm CancerMutationAnalysis_1.34.0.tar.gz CancerMutationAnalysis_1.34.0.zip |
StartedAt: 2021-10-14 08:23:05 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 08:24:14 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 68.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CancerMutationAnalysis_1.34.0.tar.gz && rm -rf CancerMutationAnalysis.buildbin-libdir && mkdir CancerMutationAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CancerMutationAnalysis.buildbin-libdir CancerMutationAnalysis_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CancerMutationAnalysis_1.34.0.zip && rm CancerMutationAnalysis_1.34.0.tar.gz CancerMutationAnalysis_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 8102k 3 287k 0 0 854k 0 0:00:09 --:--:-- 0:00:09 854k 26 8102k 26 2119k 0 0 1583k 0 0:00:05 0:00:01 0:00:04 1583k 40 8102k 40 3254k 0 0 1391k 0 0:00:05 0:00:02 0:00:03 1390k 47 8102k 47 3872k 0 0 1164k 0 0:00:06 0:00:03 0:00:03 1164k 72 8102k 72 5887k 0 0 1355k 0 0:00:05 0:00:04 0:00:01 1355k 100 8102k 100 8102k 0 0 1584k 0 0:00:05 0:00:05 --:--:-- 1635k install for i386 * installing *source* package 'CancerMutationAnalysis' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c get.cdf.het.berns.c -o get.cdf.het.berns.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o CancerMutationAnalysis.dll tmp.def get.cdf.het.berns.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CancerMutationAnalysis.buildbin-libdir/00LOCK-CancerMutationAnalysis/00new/CancerMutationAnalysis/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CancerMutationAnalysis' finding HTML links ... done BackRatesBreast html BackRatesColon html BackRatesGBM html BackRatesMB html BackRatesPancreas html EntrezID2Name html GeneAlterBreast html GeneAlterColon html GeneAlterGBM html GeneAlterMB html GeneAlterPancreas html GeneCovBreast html GeneCovColon html GeneCovGBM html GeneCovMB html GeneCovPancreas html GeneID2Name11 html GeneSampBreast html GeneSampColon html GeneSampGBM html GeneSampMB html GeneSampPancreas html SetMethodsSims-class html cma.fdr html cma.scores html cma.set.sim html cma.set.stat html combine.sims html extract.sims.method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'CancerMutationAnalysis' is deprecated and will be removed from Bioconductor version 3.14 ** testing if installed package can be loaded from final location Warning: Package 'CancerMutationAnalysis' is deprecated and will be removed from Bioconductor version 3.14 ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CancerMutationAnalysis' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c get.cdf.het.berns.c -o get.cdf.het.berns.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CancerMutationAnalysis.dll tmp.def get.cdf.het.berns.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CancerMutationAnalysis.buildbin-libdir/CancerMutationAnalysis/libs/x64 ** testing if installed package can be loaded Warning: Package 'CancerMutationAnalysis' is deprecated and will be removed from Bioconductor version 3.14 * MD5 sums packaged installation of 'CancerMutationAnalysis' as CancerMutationAnalysis_1.34.0.zip * DONE (CancerMutationAnalysis) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CancerMutationAnalysis' successfully unpacked and MD5 sums checked