Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:01 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the COSNet package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COSNet.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 400/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
COSNet 1.26.0 (landing page) Marco Frasca
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: COSNet |
Version: 1.26.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/COSNet_1.26.0.tar.gz && rm -rf COSNet.buildbin-libdir && mkdir COSNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COSNet.buildbin-libdir COSNet_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL COSNet_1.26.0.zip && rm COSNet_1.26.0.tar.gz COSNet_1.26.0.zip |
StartedAt: 2021-10-14 06:46:55 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 06:48:13 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 77.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/COSNet_1.26.0.tar.gz && rm -rf COSNet.buildbin-libdir && mkdir COSNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COSNet.buildbin-libdir COSNet_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL COSNet_1.26.0.zip && rm COSNet_1.26.0.tar.gz COSNet_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 24415 100 24415 0 0 78900 0 --:--:-- --:--:-- --:--:-- 79269 install for i386 * installing *source* package 'COSNet' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c COSNet.c -o COSNet.o COSNet.c: In function 'error_minimization': COSNet.c:462:26: warning: 'theta_best_over' may be used uninitialized in this function [-Wmaybe-uninitialized] theta_best = theta_best + DBL_MIN; ^ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o COSNet.dll tmp.def COSNet.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/COSNet.buildbin-libdir/00LOCK-COSNet/00new/COSNet/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'COSNet' finding HTML links ... done COSNet-package html COSNet html cosnet.cross.validation html find.division.not.strat html find.division.strat html generate_labels html generate_points html optimize_pos_above html optimizep html reg_data html runSubnet html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location COSNet: Cost-Sensitive algorithm for binary classification in graphs. ** testing if installed package can be loaded from final location COSNet: Cost-Sensitive algorithm for binary classification in graphs. ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'COSNet' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c COSNet.c -o COSNet.o COSNet.c: In function 'error_minimization': COSNet.c:462:26: warning: 'theta_best_over' may be used uninitialized in this function [-Wmaybe-uninitialized] theta_best = theta_best + DBL_MIN; ^ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o COSNet.dll tmp.def COSNet.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/COSNet.buildbin-libdir/COSNet/libs/x64 ** testing if installed package can be loaded COSNet: Cost-Sensitive algorithm for binary classification in graphs. * MD5 sums packaged installation of 'COSNet' as COSNet_1.26.0.zip * DONE (COSNet) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'COSNet' successfully unpacked and MD5 sums checked