Back to Multiple platform build/check report for BioC 3.13 

This page was generated on 20211015 15:06:01 0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the COHCAP package:  Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COHCAP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.  Make sure to use the following settings in order to reproduce any error or warning you see on this page. 
Package 363/2041  Hostname  OS / Arch  INSTALL  BUILD  CHECK  BUILD BIN  
COHCAP 1.38.0 (landing page) Charles Warden
 nebbiolo1  Linux (Ubuntu 20.04.2 LTS) / x86_64  OK  OK  OK  
tokay2  Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK  
machv2  macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK  
Package: COHCAP 
Version: 1.38.0 
Command: rm rf COHCAP.buildbinlibdir && mkdir COHCAP.buildbinlibdir && C:\Users\biocbuild\bbs3.13bioc\R\bin\R.exe CMD INSTALL mergemultiarch build library=COHCAP.buildbinlibdir COHCAP_1.38.0.tar.gz 
StartedAt: 20211015 08:41:06 0400 (Fri, 15 Oct 2021) 
EndedAt: 20211015 08:42:32 0400 (Fri, 15 Oct 2021) 
EllapsedTime: 85.6 seconds 
RetCode: 0 
Status: OK 
PackageFile: COHCAP_1.38.0.zip 
PackageFileSize: 1.1 MiB 
############################################################################## ############################################################################## ### ### Running command: ### ### rm rf COHCAP.buildbinlibdir && mkdir COHCAP.buildbinlibdir && C:\Users\biocbuild\bbs3.13bioc\R\bin\R.exe CMD INSTALL mergemultiarch build library=COHCAP.buildbinlibdir COHCAP_1.38.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'COHCAP' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c RcppExports.cpp o RcppExports.o "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c Rcpp_BH_ANOVA.cpp o Rcpp_BH_ANOVA.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:13, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/fisher_f.hpp:12, from Rcpp_BH_ANOVA.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/constants/constants.hpp:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/gamma.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:15, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/fisher_f.hpp:12, from Rcpp_BH_ANOVA.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:99:88: note: #pragma message: CAUTION: One or more C++11 features were found to be unavailable BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") ^ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/constants/constants.hpp:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/gamma.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:15, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/fisher_f.hpp:12, from Rcpp_BH_ANOVA.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:100:139: note: #pragma message: CAUTION: Compiling Boost.Math in preC++11 conformance modes is now deprecated and will be removed from March 2021. BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in preC++11 conformance modes is now deprecated and will be removed from March 2021.") ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:101:106: note: #pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message. BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:102:108: note: #pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_THREAD_LOCAL BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) ^ "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c Rcpp_BH_linear_regression.cpp o Rcpp_BH_linear_regression.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:13, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/students_t.hpp:16, from Rcpp_BH_linear_regression.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/constants/constants.hpp:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/gamma.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:15, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/students_t.hpp:16, from Rcpp_BH_linear_regression.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:99:88: note: #pragma message: CAUTION: One or more C++11 features were found to be unavailable BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") ^ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/constants/constants.hpp:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/gamma.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:15, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/students_t.hpp:16, from Rcpp_BH_linear_regression.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:100:139: note: #pragma message: CAUTION: Compiling Boost.Math in preC++11 conformance modes is now deprecated and will be removed from March 2021. BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in preC++11 conformance modes is now deprecated and will be removed from March 2021.") ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:101:106: note: #pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message. BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:102:108: note: #pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_THREAD_LOCAL BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) ^ "C:/rtools40/mingw32/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I"c:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c Rcpp_BH_ttest.cpp o Rcpp_BH_ttest.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:13, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/students_t.hpp:16, from Rcpp_BH_ttest.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/constants/constants.hpp:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/gamma.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:15, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/students_t.hpp:16, from Rcpp_BH_ttest.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:99:88: note: #pragma message: CAUTION: One or more C++11 features were found to be unavailable BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") ^ In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/constants/constants.hpp:11, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/gamma.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:15, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/students_t.hpp:16, from Rcpp_BH_ttest.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:100:139: note: #pragma message: CAUTION: Compiling Boost.Math in preC++11 conformance modes is now deprecated and will be removed from March 2021. BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in preC++11 conformance modes is now deprecated and will be removed from March 2021.") ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:101:106: note: #pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message. BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/tools/cxx03_warn.hpp:102:108: note: #pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_THREAD_LOCAL BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) ^ C:/rtools40/mingw32/bin/g++ std=gnu++11 shared s staticlibgcc o COHCAP.dll tmp.def RcppExports.o Rcpp_BH_ANOVA.o Rcpp_BH_linear_regression.o Rcpp_BH_ttest.o Lc:/extsoft/lib/i386 Lc:/extsoft/lib LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/i386 lR installing to C:/Users/biocbuild/bbs3.13bioc/meat/COHCAP.buildbinlibdir/00LOCKCOHCAP/00new/COHCAP/libs/i386 ** R ** inst ** bytecompile and prepare package for lazy loading ** help *** installing help indices converting help for package 'COHCAP' finding HTML links ... done COHCAP.BSSeq.preprocess html COHCAP.BSSeq_V2.methyl.table html COHCAP.annotate html COHCAP.avg.by.island html COHCAP.avg.by.site html COHCAP.denovo html COHCAP.integrate.avg.by.island html COHCAP.integrate.avg.by.site html COHCAP.qc html COHCAP.reformatFinalReport html COHCAP.site html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'COHCAP' ... ** libs "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c RcppExports.cpp o RcppExports.o "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c Rcpp_BH_ANOVA.cpp o Rcpp_BH_ANOVA.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:13, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/fisher_f.hpp:12, from Rcpp_BH_ANOVA.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c Rcpp_BH_linear_regression.cpp o Rcpp_BH_linear_regression.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:13, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/students_t.hpp:16, from Rcpp_BH_linear_regression.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ "C:/rtools40/mingw64/bin/"g++ std=gnu++11 I"C:/Users/BIOCBU~1/BBS3~1.13/R/include" DNDEBUG I'C:/Users/biocbuild/bbs3.13bioc/R/library/Rcpp/include' I'C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include' I"C:/extsoft/include" O2 Wall mfpmath=sse msse2 mstackrealign c Rcpp_BH_ttest.cpp o Rcpp_BH_ttest.o In file included from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/arg.hpp:25, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/apply.hpp:24, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find_if.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/find.hpp:17, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/contains.hpp:20, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/policies/policy.hpp:10, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/special_functions/beta.hpp:13, from C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/math/distributions/students_t.hpp:16, from Rcpp_BH_ttest.cpp:4: C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [Wparentheses] failed ************ (Pred::************ ^ C:/Users/biocbuild/bbs3.13bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [Wparentheses] failed ************ (boost::mpl::not_<Pred>::************ ^ C:/rtools40/mingw64/bin/g++ std=gnu++11 shared s staticlibgcc o COHCAP.dll tmp.def RcppExports.o Rcpp_BH_ANOVA.o Rcpp_BH_linear_regression.o Rcpp_BH_ttest.o LC:/extsoft/lib/x64 LC:/extsoft/lib LC:/Users/BIOCBU~1/BBS3~1.13/R/bin/x64 lR installing to C:/Users/biocbuild/bbs3.13bioc/meat/COHCAP.buildbinlibdir/COHCAP/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'COHCAP' as COHCAP_1.38.0.zip * DONE (COHCAP)