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This page was generated on 2021-10-15 15:05:57 -0400 (Fri, 15 Oct 2021).

CHECK results for AssessORF on tokay2

To the developers/maintainers of the AssessORF package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AssessORF.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 95/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AssessORF 1.10.0  (landing page)
Deepank Korandla
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/AssessORF
git_branch: RELEASE_3_13
git_last_commit: c43e459
git_last_commit_date: 2021-05-19 12:39:14 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: AssessORF
Version: 1.10.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AssessORF.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings AssessORF_1.10.0.tar.gz
StartedAt: 2021-10-14 19:41:42 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 19:45:21 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 219.0 seconds
RetCode: 0
Status:   OK  
CheckDir: AssessORF.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AssessORF.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings AssessORF_1.10.0.tar.gz
###
##############################################################################
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/AssessORF.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AssessORF/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AssessORF' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AssessORF' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
MapAssessmentData 18.66   1.66   20.52
plot.Assessment   12.67   1.97   14.64
AssessGenes       11.63   0.31   12.41
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
MapAssessmentData 16.20   1.71   17.92
plot.Assessment    8.93   2.21   11.14
AssessGenes       10.28   0.07   10.34
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

AssessORF.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/AssessORF_1.10.0.tar.gz && rm -rf AssessORF.buildbin-libdir && mkdir AssessORF.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AssessORF.buildbin-libdir AssessORF_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL AssessORF_1.10.0.zip && rm AssessORF_1.10.0.tar.gz AssessORF_1.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 10 4554k   10  471k    0     0   468k      0  0:00:09  0:00:01  0:00:08  468k
 37 4554k   37 1728k    0     0   864k      0  0:00:05  0:00:01  0:00:04  865k
 55 4554k   55 2518k    0     0   840k      0  0:00:05  0:00:02  0:00:03  841k
 95 4554k   95 4362k    0     0  1092k      0  0:00:04  0:00:03  0:00:01 1092k
100 4554k  100 4554k    0     0  1119k      0  0:00:04  0:00:04 --:--:-- 1119k

install for i386

* installing *source* package 'AssessORF' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AssessORF'
    finding HTML links ... done
    AssessGenes                             html  
    Assessment-class                        html  
    CompareAssessmentResults                html  
    MapAssessmentData                       html  
    ScoreAssessmentResults                  html  
    as.matrix.Assessment                    html  
    mosaicplot.Assessment                   html  
    plot.Assessment                         html  
    print.Assessment                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AssessORF' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AssessORF' as AssessORF_1.10.0.zip
* DONE (AssessORF)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'AssessORF' successfully unpacked and MD5 sums checked

Tests output


Example timings

AssessORF.Rcheck/examples_i386/AssessORF-Ex.timings

nameusersystemelapsed
AssessGenes11.63 0.3112.41
CompareAssessmentResults0.030.000.03
MapAssessmentData18.66 1.6620.52
ScoreAssessmentResults000
as.matrix.Assessment0.000.010.02
mosaicplot.Assessment0.030.000.03
plot.Assessment12.67 1.9714.64
print.Assessment0.960.101.04

AssessORF.Rcheck/examples_x64/AssessORF-Ex.timings

nameusersystemelapsed
AssessGenes10.28 0.0710.34
CompareAssessmentResults0.020.000.01
MapAssessmentData16.20 1.7117.92
ScoreAssessmentResults0.010.000.02
as.matrix.Assessment000
mosaicplot.Assessment0.040.000.03
plot.Assessment 8.93 2.2111.14
print.Assessment1.410.181.59