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CHECK report for bladderbatch on malbec1

This page was generated on 2021-05-06 14:10:05 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the bladderbatch package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 29/398HostnameOS / ArchINSTALLBUILDCHECK
bladderbatch 1.28.0  (landing page)
Jeffrey T. Leek
Snapshot Date: 2021-05-06 09:00:13 -0400 (Thu, 06 May 2021)
URL: https://git.bioconductor.org/packages/bladderbatch
Branch: RELEASE_3_12
Last Commit: 5d604cb
Last Changed Date: 2020-10-27 09:53:50 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository

Summary

Package: bladderbatch
Version: 1.28.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:bladderbatch.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings bladderbatch_1.28.0.tar.gz
StartedAt: 2021-05-06 11:36:50 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 11:37:10 -0400 (Thu, 06 May 2021)
EllapsedTime: 19.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: bladderbatch.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:bladderbatch.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings bladderbatch_1.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/bladderbatch.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bladderbatch/DESCRIPTION’ ... OK
* this is package ‘bladderbatch’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bladderbatch’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.2Mb
  sub-directories of 1Mb or more:
    data   9.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  bladderdata.rda    9.1Mb    8.1Mb       xz
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.12-data-experiment/meat/bladderbatch.Rcheck/00check.log’
for details.



Installation output

bladderbatch.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bladderbatch
###
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘bladderbatch’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bladderbatch)

Tests output


Example timings