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INSTALL report for tweeDEseq on malbec2

This page was generated on 2020-10-17 11:55:58 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE tweeDEseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1848/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tweeDEseq 1.34.0
Juan R Gonzalez
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/tweeDEseq
Branch: RELEASE_3_11
Last Commit: f4ba3f6
Last Changed Date: 2020-04-27 14:27:45 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: tweeDEseq
Version: 1.34.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL tweeDEseq
StartedAt: 2020-10-16 16:21:10 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:21:15 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 5.4 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL tweeDEseq
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘tweeDEseq’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c cov_wt_C.c -o cov_wt_C.o
cov_wt_C.c: In function ‘cov_wt_C’:
cov_wt_C.c:79:14: warning: ‘wvar’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   free(aux), free(wvar), free(y);
              ^~~~~~~~~~
cov_wt_C.c: In function ‘momentEstimates_wt_C’:
cov_wt_C.c:154:12: warning: ‘moments’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   free(y), free(moments), free(aux);
            ^~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c init_tweeDEseq.c -o init_tweeDEseq.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c loglikGlm.c -o loglikGlm.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c logprobs.c -o logprobs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c permtest.c -o permtest.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c probs.c -o probs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c zhu2.c -o zhu2.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c zhu3.c -o zhu3.o
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o tweeDEseq.so cov_wt_C.o init_tweeDEseq.o loglikGlm.o logprobs.o permtest.o probs.o zhu2.o zhu3.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-tweeDEseq/00new/tweeDEseq/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tweeDEseq)