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INSTALL report for triplex on malbec2

This page was generated on 2020-10-17 11:55:58 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE triplex PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1836/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
triplex 1.28.0
Jiri Hon
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/triplex
Branch: RELEASE_3_11
Last Commit: e3bb479
Last Changed Date: 2020-04-27 14:34:22 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: triplex
Version: 1.28.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL triplex
StartedAt: 2020-10-16 16:24:44 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:25:02 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 17.8 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL triplex
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘triplex’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c R_init_triplex.c -o R_init_triplex.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c align.c -o align.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c align_interface.c -o align_interface.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c dl_list.c -o dl_list.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c interval.c -o interval.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c libtriplex.c -o libtriplex.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c progress.c -o progress.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c search.c -o search.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/IRanges/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/XVector/include' -I'/home/biocbuild/bbs-3.11-bioc/R/library/Biostrings/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c search_interface.c -o search_interface.o
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o triplex.so Biostrings_stubs.o IRanges_stubs.o R_init_triplex.o XVector_stubs.o align.o align_interface.o dl_list.o interval.o libtriplex.o progress.o search.o search_interface.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-triplex/00new/triplex/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (triplex)