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INSTALL report for topGO on tokay2

This page was generated on 2020-10-17 11:57:56 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE topGO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1816/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
topGO 2.40.0
Adrian Alexa
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/topGO
Branch: RELEASE_3_11
Last Commit: 03af5a8
Last Changed Date: 2020-04-27 14:14:44 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: topGO
Version: 2.40.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/topGO_2.40.0.tar.gz && rm -rf topGO.buildbin-libdir && mkdir topGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=topGO.buildbin-libdir topGO_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL topGO_2.40.0.zip && rm topGO_2.40.0.tar.gz topGO_2.40.0.zip
StartedAt: 2020-10-16 18:05:48 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:07:52 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 124.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/topGO_2.40.0.tar.gz && rm -rf topGO.buildbin-libdir && mkdir topGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=topGO.buildbin-libdir topGO_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL topGO_2.40.0.zip && rm topGO_2.40.0.tar.gz topGO_2.40.0.zip
###
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100  427k  100  427k    0     0  2621k      0 --:--:-- --:--:-- --:--:-- 2737k

install for i386

* installing *source* package 'topGO' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'topGO'
    finding HTML links ... done
    GOTests                                 html  
    GOdata                                  html  
    annFUN                                  html  
    classicCount-class                      html  
    classicExpr-class                       html  
    classicScore-class                      html  
    dagFunctions                            html  
    diagnosticMethods                       html  
    elimCount-class                         html  
    elimExpr-class                          html  
    elimScore-class                         html  
    geneList                                html  
    getPvalues                              html  
    getSigGroups                            html  
    groupGOTerms                            html  
    groupStats-class                        html  
    inducedGraph                            html  
    parentChild-class                       html  
    printGraph-methods                      html  
    topGO-package                           html  
    topGOdata-class                         html  
    topGOresult-class                       html  
    weightCount-class                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'topGO' ...
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'topGO' as topGO_2.40.0.zip
* DONE (topGO)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'topGO' successfully unpacked and MD5 sums checked