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CHECK report for supraHex on malbec2

This page was generated on 2020-10-17 11:55:52 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE supraHex PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1759/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.26.0
Hai Fang
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/supraHex
Branch: RELEASE_3_11
Last Commit: dd68e51
Last Changed Date: 2020-04-27 14:35:58 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: supraHex
Version: 1.26.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings supraHex_1.26.0.tar.gz
StartedAt: 2020-10-17 05:54:40 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 05:55:32 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 52.4 seconds
RetCode: 0
Status:  OK 
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings supraHex_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/supraHex.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL supraHex
###
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.1150.0000.115
sCompReorder0.8840.0280.913
sDistance0.1130.0000.113
sDmat0.1580.0030.162
sDmatCluster0.2350.0000.235
sDmatMinima0.1530.0080.161
sHexDist0.0030.0000.003
sHexGrid0.0020.0000.002
sHexGridVariant0.0020.0000.003
sHexPolygon0.0030.0000.003
sInitial0.0030.0000.003
sMapOverlay0.2050.0040.209
sNeighAny0.0080.0000.008
sNeighDirect0.0050.0000.004
sTopology0.0150.0040.019
sTrainBatch0.0490.0040.053
sTrainSeq0.4810.0000.481
sTrainology0.0030.0000.003
sWriteData0.2160.0040.220
visColoralpha0.0050.0000.006
visColorbar0.0410.0000.041
visColormap0.0060.0000.006
visCompReorder0.9520.0240.977
visDmatCluster0.3380.0040.343
visDmatHeatmap0.2710.0040.274
visHeatmap0.1130.0040.116
visHeatmapAdv0.6280.0000.628
visHexAnimate0.0020.0000.002
visHexBarplot0.3500.0040.354
visHexComp0.1030.0120.115
visHexGrid0.0810.0000.080
visHexMapping0.8980.0080.905
visHexMulComp0.6360.0040.640
visHexPattern1.5090.0321.540
visKernels0.0130.0000.013
visTreeBSclust0.0600.0000.061
visTreeBootstrap0.1190.0030.123
visVp0.0150.0000.015