sparseMatrixStats 1.0.5
Constantin Ahlmann-Eltze
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/sparseMatrixStats |
| Branch: RELEASE_3_11 |
| Last Commit: 0eaf6f7 |
| Last Changed Date: 2020-05-24 07:16:39 -0400 (Sun, 24 May 2020) |
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | NA | |
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/sparseMatrixStats_1.0.5.tar.gz && rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.0.5.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL sparseMatrixStats_1.0.5.zip && rm sparseMatrixStats_1.0.5.tar.gz sparseMatrixStats_1.0.5.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 35176 100 35176 0 0 528k 0 --:--:-- --:--:-- --:--:-- 592k
install for i386
* installing *source* package 'sparseMatrixStats' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseMatrixView.cpp -o SparseMatrixView.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse(T, int, double) [with T = VectorSubsetView<14>]':
quantile.h:83:80: required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:17, auto:18, int)> [with auto:17 = SkipNAVectorSubsetView<14>; auto:18 = SkipNAVectorSubsetView<13>]':
methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:17, auto:18, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:371:4: required from here
methods.cpp:344:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:17, auto:18, int)> [with auto:17 = VectorSubsetView<14>; auto:18 = VectorSubsetView<13>]':
methods.cpp:30:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:17, auto:18, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:371:4: required from here
methods.cpp:344:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse(T, int, double) [with T = SkipNAVectorSubsetView<14>]':
methods.cpp:222:27: required from 'dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:6, auto:7, int)> [with auto:6 = SkipNAVectorSubsetView<14>; auto:7 = SkipNAVectorSubsetView<13>]'
methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:6, auto:7, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:223:4: required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/sparseMatrixStats.buildbin-libdir/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sparseMatrixStats'
finding HTML links ... done
colAlls-dgCMatrix-method html
colAnyNAs-dgCMatrix-method html
colAnys-dgCMatrix-method html
colAvgsPerRowSet-dgCMatrix-method html
colCollapse-dgCMatrix-method html
colCounts-dgCMatrix-method html
colCummaxs-dgCMatrix-method html
colCummins-dgCMatrix-method html
colCumprods-dgCMatrix-method html
colCumsums-dgCMatrix-method html
colDiffs-dgCMatrix-method html
colIQRDiffs-dgCMatrix-method html
colIQRs-dgCMatrix-method html
colLogSumExps-dgCMatrix-method html
colMadDiffs-dgCMatrix-method html
colMads-dgCMatrix-method html
colMaxs-dgCMatrix-method html
colMeans2-dgCMatrix-method html
colMedians-dgCMatrix-method html
colMins-dgCMatrix-method html
colOrderStats-dgCMatrix-method html
colProds-dgCMatrix-method html
colQuantiles-dgCMatrix-method html
colRanges-dgCMatrix-method html
colRanks-dgCMatrix-method html
colSdDiffs-dgCMatrix-method html
colSds-dgCMatrix-method html
colSums2-dgCMatrix-method html
colTabulates-dgCMatrix-method html
colVarDiffs-dgCMatrix-method html
colVars-dgCMatrix-method html
colWeightedMads-dgCMatrix-method html
colWeightedMeans-dgCMatrix-method html
colWeightedMedians-dgCMatrix-method html
colWeightedSds-dgCMatrix-method html
colWeightedVars-dgCMatrix-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sparseMatrixStats' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SparseMatrixView.cpp -o SparseMatrixView.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++14 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse(T, int, double) [with T = VectorSubsetView<14>]':
quantile.h:83:80: required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:17, auto:18, int)> [with auto:17 = SkipNAVectorSubsetView<14>; auto:18 = SkipNAVectorSubsetView<13>]':
methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:17, auto:18, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:371:4: required from here
methods.cpp:344:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:17, auto:18, int)> [with auto:17 = VectorSubsetView<14>; auto:18 = VectorSubsetView<13>]':
methods.cpp:30:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colOrderStats(Rcpp::S4, int, bool)::<lambda(auto:17, auto:18, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:371:4: required from here
methods.cpp:344:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse(T, int, double) [with T = SkipNAVectorSubsetView<14>]':
methods.cpp:222:27: required from 'dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:6, auto:7, int)> [with auto:6 = SkipNAVectorSubsetView<14>; auto:7 = SkipNAVectorSubsetView<13>]'
methods.cpp:25:18: required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = dgCMatrix_colMedians(Rcpp::S4, bool)::<lambda(auto:6, auto:7, int)>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:223:4: required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/sparseMatrixStats.buildbin-libdir/sparseMatrixStats/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sparseMatrixStats' as sparseMatrixStats_1.0.5.zip
* DONE (sparseMatrixStats)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'sparseMatrixStats' successfully unpacked and MD5 sums checked