Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

BUILD BIN report for plier on tokay2

This page was generated on 2020-10-17 11:57:25 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE plier PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1321/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plier 1.58.0
Crispin Miller
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/plier
Branch: RELEASE_3_11
Last Commit: 2b98480
Last Changed Date: 2020-04-27 14:10:51 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: plier
Version: 1.58.0
Command: rm -rf plier.buildbin-libdir && mkdir plier.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plier.buildbin-libdir plier_1.58.0.tar.gz
StartedAt: 2020-10-17 11:16:54 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 11:17:26 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 31.8 seconds
RetCode: 0
Status:  OK  
PackageFile: plier_1.58.0.zip
PackageFileSize: 185 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf plier.buildbin-libdir && mkdir plier.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plier.buildbin-libdir plier_1.58.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'plier' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c affyplier.cpp -o affyplier.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c plier_impl.cpp -o plier_impl.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:905:14: warning: variable 'icount' set but not used [-Wunused-but-set-variable]
  long count, icount;
              ^~~~~~
plieralg.cpp: At global scope:
plieralg.cpp:49:12: warning: 'g_ErrorCode' defined but not used [-Wunused-variable]
 static int g_ErrorCode=NoError;
            ^~~~~~~~~~~
plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:1257:24: warning: 'LogLikelihood' may be used uninitialized in this function [-Wmaybe-uninitialized]
  output = LogLikelihood/nSize;
           ~~~~~~~~~~~~~^~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c rwrapper.cpp -o rwrapper.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plier.dll tmp.def affyplier.o plier_impl.o plieralg.o rwrapper.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/plier.buildbin-libdir/00LOCK-plier/00new/plier/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'plier'
    finding HTML links ... done
    justPlier                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'plier' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c affyplier.cpp -o affyplier.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c plier_impl.cpp -o plier_impl.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:905:14: warning: variable 'icount' set but not used [-Wunused-but-set-variable]
  long count, icount;
              ^~~~~~
plieralg.cpp: At global scope:
plieralg.cpp:49:12: warning: 'g_ErrorCode' defined but not used [-Wunused-variable]
 static int g_ErrorCode=NoError;
            ^~~~~~~~~~~
plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:1257:24: warning: 'LogLikelihood' may be used uninitialized in this function [-Wmaybe-uninitialized]
  output = LogLikelihood/nSize;
           ~~~~~~~~~~~~~^~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c rwrapper.cpp -o rwrapper.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plier.dll tmp.def affyplier.o plier_impl.o plieralg.o rwrapper.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/plier.buildbin-libdir/plier/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plier' as plier_1.58.0.zip
* DONE (plier)