netresponse 1.48.0
Leo Lahti
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/netresponse |
| Branch: RELEASE_3_11 |
| Last Commit: 513b9a2 |
| Last Changed Date: 2020-04-27 14:23:08 -0400 (Mon, 27 Apr 2020) |
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf netresponse.buildbin-libdir && mkdir netresponse.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netresponse.buildbin-libdir netresponse_1.48.0.tar.gz
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install for i386
* installing *source* package 'netresponse' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable]
const char *prior_fields[]={"Mumu","S2mu",
^~~~~~~~~~~~
netresponse.c: In function 'mLogLambda':
netresponse.c:713:3: warning: 'U_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
post_gamma, log_lambda, prior_alpha,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
U_p, U_hat,
~~~~~~~~~~~
datalen, dim1, dim2, data1, data2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Ns, ncentroids, implicitnoisevar);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:713:3: warning: 'KsiBeta' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'KsiAlpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'BetaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'AlphaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mutilde' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mubar' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'S2mu' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mumu' may be used uninitialized in this function [-Wmaybe-uninitialized]
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/netresponse.buildbin-libdir/00LOCK-netresponse/00new/netresponse/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'netresponse'
finding HTML links ... done
NetResponseModel-class html
P.S html
P.Sr html
P.r.s html
P.rS html
P.rs.joint html
P.rs.joint.individual html
P.s.individual html
P.s.r html
PlotMixture html
PlotMixtureBivariate html
PlotMixtureMultivariate html
PlotMixtureUnivariate html
add.ellipse html
bic.mixture html
bic.mixture.multivariate html
bic.mixture.univariate html
bic.select.best.mode html
centerData html
check.matrix html
check.network html
continuous.responses html
detect.responses html
dna html
enrichment.list.factor html
enrichment.list.factor.minimal html
factor.responses html
factor.responses.minimal html
filter.netw html
filter.network html
find.similar.features html
generate.toydata html
get.dat-NetResponseModel-method html
get.mis html
get.model.parameters html
get.subnets-NetResponseModel-method html
getqofz-NetResponseModel-method html
independent.models html
list.responses.continuous.multi html
list.responses.continuous.single html
list.responses.factor html
list.responses.factor.minimal html
list.significant.responses html
listify.groupings html
mixture.model html
model.stats html
netresponse-package html
order.responses html
osmo html
pick.model.pairs html
pick.model.parameters html
plotPCA html
plot_associations html
plot_data html
plot_expression html
plot_matrix html
plot_response html
plot_responses html
plot_scale html
plot_subnet html
read.sif html
remove.negative.edges html
response.enrichment html
response2sample html
sample2response html
set.breaks html
split.qofz html
toydata html
update.model.pair html
vdp.mixt html
vectorize.groupings html
write.netresponse.results html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'netresponse' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable]
const char *prior_fields[]={"Mumu","S2mu",
^~~~~~~~~~~~
netresponse.c: In function 'mLogLambda':
netresponse.c:713:3: warning: 'U_p' may be used uninitialized in this function [-Wmaybe-uninitialized]
vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
post_gamma, log_lambda, prior_alpha,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
U_p, U_hat,
~~~~~~~~~~~
datalen, dim1, dim2, data1, data2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Ns, ncentroids, implicitnoisevar);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:713:3: warning: 'KsiBeta' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'KsiAlpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'BetaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'AlphaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mutilde' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mubar' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'S2mu' may be used uninitialized in this function [-Wmaybe-uninitialized]
netresponse.c:713:3: warning: 'Mumu' may be used uninitialized in this function [-Wmaybe-uninitialized]
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/netresponse.buildbin-libdir/netresponse/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'netresponse' as netresponse_1.48.0.zip
* DONE (netresponse)